RNA id: TCONS_00004366


Basic Information

Item Value
RNA id TCONS_00004366
length 2110
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_002286
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36037977 ~ 36063414 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCGCGTCTTCCCGCGGCCATGGCAACATCAGCAGGCAACGGACTGAGGACCAGCCGAATGTAAAAGTGCCTTGAATAAAGGACTCATGGCCTGATATCAGCAGCTCTCAAACTAGAATCTCTGAACTCCAGTCGTGTTGAAGAAACATTCTGATTTCTCTCTCATCATGAATCTGACTGAGATCTGCGACAACGCTAAGAAAGGAAGAGAATACGCGCTTTTGGGGAACTATGACTCTTCTATGGTGTACTATCAAGGTGTTATACAGCAGATCCATAAGCACTGTCAGTCCCTCAGAGATCCTGCACAGAAAGTCAAATGGCAACAGGTACGGCAGGAACTGGCAGAGGAATATGAGCAGGTGAAAAGCATTGTAAGCACCCTGGAGAGTTTCAAGGTGGACAAAGCGGTTGATTTCCCCAACCCTGTGCCTGAGGAGGGCCCGAGGGACCCTGATGTGTGGCCTCCTCCAACCCCAGCGGAGCACAGAGGACCTGTCCAGGTGAAGAAACCAGTCCCTTTATCAAAGCCCCAGAGGAAAGAGTCTCCCGGGATGCAGCATCGTGGAGCTGTGGGCAGAGGTCAGGCCAACATTAAACCTGACAGACCCAACACCCGTGACGGACGTGGAAATAAGGCTAAGGAGGAAAAGagtaaGAGAAATGCTCAGGAGGGCGCTGCTGATGTGGAACAGAAGAAGTTTGATGGCACAGGATATGACAGCGATCTGGTGGATGCACTGGAGAGAGACATTGTGTCGCGCAATCCCAATATCCACTGGGATGACATAGCAGATCTGGAAGATGCCAAAAAGCTGCTGAGAGAGGCTGTGGTCCTGCCCATGTGGATGCCAGACTTCTTCAAGGGGATCCGCCGTCCGTGGAAGGGTGTGCTGATGGTGGGGCCTCCGGGCACTGGAAAGACCATGCTGGCGAAAGCGGTTGCGACTGAATGTGGCACAACATTTTTCAACGTGTCGTCCTCCACACTGACCTCAAAGTACAGGGGCGAGTCTGAGAAACTGGTGCGGCTCCTCTTTGAAATGGCCCGTTTTTATGCTCCCACAACCATTTTTATTGATGAGATCGACTCTATATGTGGCAGACGCGGCACATCAGATGAACATGAGGCGAGTCGCAGAGTCAAGTCAGAGTTACTGGTGCAGATGGACGGTGTAGGAGGCGCTCAAGAGAGTGAAGACCCCTCTAAAATGGTGATGGTCCTGGCAGCCACTAACTTCCCCTGGGACATCGATGAGGCTCTGAGGAGACGACTAGAGAAGAGGATCTACATCCCGCTGCCCACTGCTAAGGGCCGGGCAGAGCTGCTGAAGATCAATCTGAGAGAAGTGGATGTGGCGTCTGATGTGGACCTAACTGTCATCGCTGAGAAGATTGAGGGTTATTCGGGTGCTGACATCACCAATGTCTGCAGAGATGCGTCGATGATGGCGATGCGCAGGAGGATCCAGGGTTTGAGTCCTGAGGAGATACGAGCTCTTTCTAAAGACGAGCTTCAGATGCCGGTCACCATGGAGGACTTTGAGCTCGCACTCAAAAAGATCTCCAAATCCGTCTCAGCGGCCGACCTGGAGAAATATGAGTCCTGGATGTCCGAATTTGGGTCTGTGTGAAGACAAATCACCGCTACAAGATAAGTGTGAATGTGGGAGAACTCACTCTGTACCAATacttgggggtgggggggggggggagacaTGGTGTGATGTCTGTAGagactttttaaatgcaaaaatgctACTGAAAACTAGTGGAGCCAGATGCGTTTGGGCATGTTTGGACTGAGAAAAGACGCACCTTTAATTGTCAGAAATGCACTACTGATCTGTGTTTGACACGGAGCCATCTTTACATGTTTCTAGCATCTCagtttcaagacatttctaactTCATTCTCCACTAACAGATGGAAATCGGCTGAGTTGTCTTAAGTTTCAATTTTGTGAAAATAATACTTGACAAGGGAGAGCAGCATAATCTTGGTACTGTgctggatgttttttttatgttttattagtgTTTAGAGATGTTGTgttcttatgtgttttatttgataattataataaattaacatttattctcTACTT

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0007049 cell cycle biological_process
GO:0051013 microtubule severing biological_process
GO:0051301 cell division biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-141 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization and microtubule severing. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in nervous system and yolk syncytial layer. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1).

Ensembl:

ensembl_id ENSDART00000164678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 585897 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 623700 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 626758 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 648280 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 745746 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005924 lncRNA downstream 137770 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA downstream 137780 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA downstream 137784 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004378 lncRNA downstream 137785 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00005925 lncRNA downstream 137795 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00004365 mRNA upstream 5939 36029537 ~ 36032038 (+) True XLOC_002285
TCONS_00004364 mRNA upstream 6610 36026576 ~ 36031367 (+) False XLOC_002285
TCONS_00004362 mRNA upstream 78406 35952532 ~ 35959571 (+) False XLOC_002284
TCONS_00004363 mRNA upstream 78683 35953068 ~ 35959294 (+) True XLOC_002284
TCONS_00004359 mRNA upstream 457891 35554219 ~ 35580086 (+) True XLOC_002281
TCONS_00004367 mRNA downstream 29150 36092564 ~ 36106146 (+) True XLOC_002287
TCONS_00004368 mRNA downstream 87497 36150911 ~ 36156622 (+) False XLOC_002288
TCONS_00004369 mRNA downstream 91952 36155366 ~ 36156658 (+) True XLOC_002288
TCONS_00004372 mRNA downstream 115299 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004373 mRNA downstream 121337 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004361 other upstream 392842 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 393179 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 739278 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004342 other upstream 881449 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004339 other upstream 1028881 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004370 other downstream 95553 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 96198 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 224427 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004398 other downstream 375892 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 599255 36662669 ~ 36669034 (+) False XLOC_002313

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17571701_17576895.mRNA True 1330 mRNA 0.46 6 CI01000304 17571224 ~ 17576895 (-)