RNA id: TCONS_00004367


Basic Information

Item Value
RNA id TCONS_00004367
length 4032
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_002287
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36092564 ~ 36106146 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTTTGGAAATTGATAAAAGCTCCAACCGGAAGTCAAGTTGTTGTTGTGAAATTTAAAGTGTTGGAGGGCTTCGTACTTTTCGCTTGTGTGTTAACAGTTATTTGAGTGGGTTTTGAATGGATCTGCCCTGCCAAGATTGGGTTTGTCATGTCGAGCAGAAATGGGCTGAACTGAGATCTGAAGAAACTGAGCGTTTCAGCCTTCTGACTGATATAGATGCCATATTCAACTACGGGCTGTCACTAATATGTCCAGAGGATCTCAACATTCTGTCCAGAATCTCAGAGAAGTTTTCCGTCAAAAAGTCTCCTGAAACAGCTTCTGAGTTTAGACAGCAAGGCAACCTCAGCTTCAAAGTCAAGGATTACCCCGCAGCAGTGCTTCATTACTCCAAGGGTGTTTGCCATGCTGACAAGAATACAGATGAGCTCTCCTTGTGCTATGCTAACCGTTCTGCTGCCCTATTTTACCAAGGCCTCTACCAAgcaTGTCTTGAAGACATCAGGCGTTCTCTGGAGGCCGGTTACCCAAGCCACCTGCAGGACAAACTACAAACTAGACAAACCGCCTGCCAGAATCAGCTAAGAAAAGCTGAAAAACCCAACATACCACACACAGATCATCAATTATCACCATGCCAGAAGACTGTAAACTCTACTGGTCATCTTTCAGATGGTGTATCTGTTTATTTCAGCTCGGACAAAGGTCGCCACATGTTAGTCATGGAGAATAAACCAGCTGGAGAAGTGGTGCTGGAAGATGAAGCTTACTGTTCTGTCCTTATACCAGCTAACATATTTAATACAGGAACCAATAAGGCGGTAGAGACATTTGGTACTGAAGATCGACATTGTCACCACTGCCTCAGCCAGTCACTGAGTTTTGTGCCCTGTCCAAAGTGTAGTTACGCTCGATATTGTGGAGAGAGCTGTCAGAAAGATGCATGGGATCAATGGCACCAGTGGGAATGTCCAGTTGGAGCTGATCTGCTGGCCATTGGGGTTTTGGGACATTTAGCACTAAGAGTGGTCCTTAAAGCAGGACAAACTGAAGTCCAAATGGGGATTAAAAACACAAAAGACCATGTGACCACTTATAAAAATGATTCACCAGTCCAGTTGAGTCTCGGAGGGGACTGTGGAAAAAGTTTAGACCATACAGACTGTTTTCATGGCAGCTCATACATGGGCATCTATAGCCTTTTACCGCATGTGGCACAACACTCACCTGCTTCACGCTTCTTAATGGCCATCACCATGGCGGTGATTTACGGGAAGCTTCAAGGCGGACCTCCACCAAACAAGTGGATGTCCTTCAAAGACGAAGGAGTTAAAGCAAGCTGGCAGCCTGAGATGAGCATGCTGGGAGCCACAGCTCTGAGGCACATGATGCAGCTAAGGTGTAATGCTCAAGCAATCACTGCTGTTAGGGTCAAAGAAGAAAGTGGCATGGCTGTTCAGTCCAGCAGTGAAATCCGTATTGCCACAGCTATATTCCCTGTGCTCAGCCTGCTTAACCACTCCTGCAGTCCAAACACAAGCATCTCCTTCACTACAGGATTTCAGCCTGACCCACATAATCAGTTGGGCTGTTCTGAAGGTCACTTTGACCATCCCAAGGGCTCTCGGTCTGGTGTGACGGTCACTGTACGTGCTTCAAAAGACCTCACTGCAGGACAGGAGATTCTGCACTGTTATGGCCCTCACCGTAGCAGAATGGAGGTGAAGGAGCGTCAGCGCCTCCTGCTGGAGCAGTACTTTTTCCAGTGTGTATGTCAGGCCTGTCAGAGAGATCTGTCAGAAGGAAGCCCGAATGCAAAAGAACACACAGCACCAGGGATGAAGTGTGTGAAATGTGGAAAGCCTCTTCAGTCCCATACGGATGGATACACATGCTCTTGGTCATCCTGTGGTCATCAGATCAGCAGTGCTGATGTCCAAAACAGACTTCAGGGTTTTCAGCTTCTTTTGGATGAAGCTGTTCATCTCATGGAGCAAGACAGATTGAATGAGGCCTTACACATCCTCCAATCAGCTTTTTCTCAGGCAAACAGTATCCTGACTGAGACTCATCCTTTCCAAGGAGAGCTAGCAGATGCTCTGGCTCGGCTGTACGCCAGCACAGGTGAATGGAGTCTGGCTGCATCTCATCTGAAGCGCAGTCTTGTTGCCATTCAGGCTCAGTTTGGAGAGGACAGCATTGAGCTGGGTCGACAGCTTTTTAAATTAGCTCAGCTACATTTTAACGGAAGGGATGGTGTTGCGTCTCTCTCTGTGATTCCCAGAGCCCGAAGGCTGCTCTCTCTCCACTGCAGCCCTCGCTGTGAAGAACTGCAGGAACTGAGTGAAATGGAGCACTGTCTTCAAGGGCTGCTATGAAACAATGACTGAAAACTGACAAGCTTCTTTTTCTGATATACTGTGTGTAAAGTaggattaaaaaacataaattaactgtGTGATGTGctattttattaaagttcttGGTGCCCAAgctatatctctctctctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatacatacacattttttaaaatagtttaaattatttaattaggacagtaaggtctgactttgctttgacaagtcttgtcacttaacagaaataatgtacatctGAATGGCAATGGAATTTggaaagaaagcgttcctgcaggactactagagttcatcaagattctttggattcatcttcaaagtcttctccatcttacctcagacatgctcaataatgttcatgtctggtgactgggctggccaatcctggagcaccttgaccttctttgctttcaggaactttgatgtggaggctgaagtatgagaaggagcgctatcctgctgaagaatttgccctcttctgtggtttttaatctaatgggcagcacaaatgtcttgatacctcaggctgtggaTGTTGCTATTCACTCtgtagatctctcgcacgcccccatattgaatgtaacccacaaaccatgatttttttcttcaccaaacttgactgttttCTATGAAAATCTTGGggccatgcaggttccaataggtcttctgcagtattgggatgcagttcaacagatgatttatgataaaaatctaccttctgccacttttgctaatgatcaactagaagtcaagttatttgttgcttctaaaactgggatcgacgacaagactttgtgttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaaagaaagaagattattatgcaagaaaaaaatatgtaaaatgttcaattaaaatgACCGATGACATATTTGTAATTACAATATGTTTTATGATTTTATCTATTAAAAAGTGTATTAAACAACATCAACACATGTAAATGGGAGattcaattcaataaaaaaaagtccCTGTCCTTTCTCAATAATTTCagtattacaatatatataaatatacaagaaTTTCACGTAAAAAGCTAATATTTGGGGTCATTTTAGCTTGAAAACAGTTTGCTGGGCCACTAGATGGCGGTCTTTGACAAACATGAATGAAATGCGTGTGAGACGTGAAGCGAATTACCAACATTAATGTCACTCACTGGAATAAATAagattacatttgttttaatgtgtAACTCTTGACTGCTCAGAAACAGTACAATTGAATGAATCCCACACACATTTATGTATAATGCCATGAAAATTTCATAAGCTTTCACTTAATAGACTTCTCTGTCAGCAATGATTTGTCAAGAAAAGATACACATTTATTCATCCTTAGACCATCTAAGTTGGTAACTTTTGGTCAAACGATTTTTGTAGCTGCGATCCTTTCTTATTAATGCAAGCCTGCTAGGTACCaaccagggtgcgaattacagggagGGGGGTCTGACCCCCAATTAACGCTTGATCTCCCCTGAAGCACATCTAAAAATGGTGTACAGG

Function

GO:

id name namespace
GO:0003007 heart morphogenesis biological_process
GO:1901726 negative regulation of histone deacetylase activity biological_process
GO:0001947 heart looping biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-060929-248 Predicted to enable metal ion binding activity. Acts upstream of or within heart looping and negative regulation of histone deacetylase activity. Is expressed in blood vessel; cardiac ventricle; heart; heart tube; and polster. Used to study congenital heart disease. Orthologous to human SMYD4 (SET and MYND domain containing 4).

Ensembl:

ensembl_id ENSDART00000086490

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 640484 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 678287 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 681345 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 702867 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 800333 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005924 lncRNA downstream 95038 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA downstream 95048 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA downstream 95052 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004378 lncRNA downstream 95053 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00005925 lncRNA downstream 95063 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00004366 mRNA upstream 29150 36037977 ~ 36063414 (+) True XLOC_002286
TCONS_00004365 mRNA upstream 60526 36029537 ~ 36032038 (+) True XLOC_002285
TCONS_00004364 mRNA upstream 61197 36026576 ~ 36031367 (+) False XLOC_002285
TCONS_00004362 mRNA upstream 132993 35952532 ~ 35959571 (+) False XLOC_002284
TCONS_00004363 mRNA upstream 133270 35953068 ~ 35959294 (+) True XLOC_002284
TCONS_00004368 mRNA downstream 44765 36150911 ~ 36156622 (+) False XLOC_002288
TCONS_00004369 mRNA downstream 49220 36155366 ~ 36156658 (+) True XLOC_002288
TCONS_00004372 mRNA downstream 72567 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004373 mRNA downstream 78605 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004374 mRNA downstream 88381 36194527 ~ 36196218 (+) True XLOC_002292
TCONS_00004361 other upstream 447429 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 447766 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 793865 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004342 other upstream 936036 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004339 other upstream 1083468 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004370 other downstream 52821 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 53466 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 181695 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004398 other downstream 333160 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 556523 36662669 ~ 36669034 (+) False XLOC_002313

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17266905_17272656.mRNA True 2968 mRNA 0.43 10 CI01000304 17266244 ~ 17272740 (+)