XLOC_002292 (or108-1)


Basic Information

Item Value
gene id XLOC_002292
gene name or108-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36194527 ~ 36196218 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004374
GATTCACAGCGACCCCAGAATGTGAAGCAGAGACGAAAACTGCAGCGAAGACAACAGTGTGGTTTGTTTTCATTCAGTGTATGTATGACTACAGCAATCATTGTAACAAGTGTATCTTTCATTGTTATTTTTCTTGTTGCATCCTGTAATGAAGGCCTGTGTGATCATTTGTAAAGCACAAGCTGTCATGTGTGTTTTGTAGCAGCGAAGGCACACCTCAGCGAAGGCCTTAAAGGATATAAAGCAATGCAAAACATCAACAGCTCCATCATACAGCCTGCAGGATTTTACATTGTCGCATTGAGTTCAGTGCCTTACAGTAATGTCTATGTCATGTTCCTCACCGTGCTGTATGTGATCACAGTCATATGCAATGTCTTTCTGATGTCCATTATTGTCTATGATCAGCGTCTGCATGTGCCAAAGTTCATGGCTGTTGGTAATCTGGCTGTGGTTGATCTTATTCTCAGCACTTCTCTGGTGCCTGGCATGATTAAGATTTACATCGTTCTTGACAATTTTATGCCGTTCAAGCTGTGTCTTGTGCAAATGTACACTTACTATACGTTTTTAGAGCTAGAGACACTTTCCCTGTGTATTCTCTCTTATGACCGGTTCATTGCCATCTGCTTTCCTTTAAGACACGAATCCATAAACACAAACACCAGAATGACTTATATTATCTGTGTAAGCTGGTTCCTTTCTTTTAGTATATCACTATACGGCACTTTATCCATCCCAGCTCTCTCATTCTGTGGCTCTCTCCAGGTCAACAGCTATTTTTGTGATTACGCTCCTGTTTTAAGAGTTGCTTGCAGCAACACGACATCTCAGTGGAACTTTGCCACTATATTATCTATACTCTTTTTGGCTGTacctttgtgttttattttcctgACATATATGTTTATTCTGTATGCTGTATTCAGAATGAATAACAATCAGCGCCGGTTTAAGGCTCTGGCCACATGCACTGAGCACCTCATTTTAGTGTCTCTATACTTTTTTCCTATTGCGATTATCTTCAGCCTTGGATTTTTTGGAGTCATTATAAACCCGAGTGTAAGAACAGTGTGTTTGTCTTTGTCATCTGTTCTCCCACCCTGCGCAAATCCCGTTATCTACTCACTGAAAACTAAGGAGATTCGAAGCAAGATTGTTTCTTTATTAAACCTGAGATTGTCTGTTCATCCtcttaaaaatgtacattaatgTAAAGCGCGACAGTGACTCAAGTGTAAATTGTGTGGGATTATTTATTGTTATCTTTCTGCTTCTGTTATTTTGTGGTTATTTTAAATTGGATTGTTTCAGTAATACTGCATCTATTTTAATTCACAATTCTGCTTTGATGTTAACTTGTAAAACTGAGTGTACTTTTCTGGTCACGTTACAAGATTTCATTAGAAAGGTTAGTTaaggtatttactaacatgaactaatcatgaacaatacttgtacagcatttattcatattaaaatgcatgcttgttaacattagttaatgcactgtgaagtGAACAATGAACacttgtattttcattaactaacatagtactgtaataaatgtattattcatcgTTTATTCATGtacataaatgcattaattaactaatacaaccttactgtaaagtgtttccCCTTTTCTGTTGGTTGAACTTTCACAATTTTGGTAATAAAGAACACAACCCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-4 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000068704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004374 True 1692 mRNA 0.37 1 36194527 36196218

Neighbor

gene id symbol gene type direction distance location
XLOC_002291 or108-2 coding upstream 8181 36184751 ~ 36186346 (+)
XLOC_002290 or108-3 coding upstream 14436 36178713 ~ 36180091 (+)
XLOC_002289 BX088524.3 coding upstream 34240 36158967 ~ 36160287 (+)
XLOC_002288 waif2 coding upstream 37869 36150911 ~ 36156658 (+)
XLOC_002287 smyd4 coding upstream 88381 36092564 ~ 36106146 (+)
XLOC_002293 COA4 coding downstream 1750 36197968 ~ 36200051 (+)
XLOC_002294 NA coding downstream 4966 36201184 ~ 36381043 (+)
XLOC_002295 or106-12 coding downstream 68946 36265164 ~ 36267439 (+)
XLOC_002296 or106-11 coding downstream 75960 36272178 ~ 36274889 (+)
XLOC_002297 or106-10 coding downstream 81310 36277528 ~ 36279141 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 549392 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 549729 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 780250 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 952499 35236348 ~ 35242028 (+)
XLOC_002299 BX088524.1 non-coding downstream 91623 36287841 ~ 36288503 (+)
XLOC_002315 CU694807.1 non-coding downstream 530020 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 608818 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 764358 36960576 ~ 36960690 (+)

Expression


Co-expression Network