XLOC_002296 (or106-11)


Basic Information

Item Value
gene id XLOC_002296
gene name or106-11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36272178 ~ 36274889 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004381
ATTGAAGGAGTGTTAGAGAGATTTGCATATTAAATTCTCATTTatgttgctttatttaaaaagttataacaaggggaattattttgaaaatactttcTTTATTCTTCAGAATGAATGAAACTCTTTTTGTACTTTTGTTAAAACTGTACTTCAATCTTAACAGTTTTCATCACCTGTACCTTACAGAAACTGCCTGCATCTTTCTGCCCTTTTCTTTTACAGGAGCTTTTTTTCTCTGCATATATGAGTACATTGAGGATGTAGTTGCCAGCTTTCAACTACACTAACTGGGTACTAACTGTATGTAAGAGATTTGGTAATTGATAATGGCGAATGAAACTTTTGTGAAAAATGTTGACAGCTTTATAATTACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTTGGATCGCTCATCTTGATAACCTACATACTCATACTGCTTGGGAATGGCATCAATCTGTTTATCATCTCGACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCCGTTGTTGATGTAATGTACTCCTCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACTGTTTCATTCTACTCTTGCATCTCCAGGACATACTTCTATCATGTTGGTGGTTTCACAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGACTTATTGCTATTAGGCTTCCATTAAGATACCACAGCATTGTCACAAATTCACGAGTCTTTCTGCTTATTTTTCTGACCTGGCTCGCTGGTTTTGCTGTTATAGGTTACGTAATATCAGTTTCGGACAATGTCCCATACTGTCAGCCAATCATCAAATATGTGTTTTGTGAGTATGCTTCCATGATCAGAGCTGCTTGTGTTGATCCTGAgccatatttttttatatctgcGATGTTAAATATGTGGCTATTGTGTGGACAGTTCCCTTTTATATTGTGCACATATGCTGTTCTGGCATATAGTGTGACTAAACTGGCCAACAATTCAAACAAAAAGCAATTGATCAACACTTGCTTGAGTCATATAATTGTTCTCTCCAGTTTTTATGCTCCAAAGCTTGTCTCTACCTTACTCACTCGAATAGGAGTTGTGTTGACTTTAACAGAGCGAAATGCAATTCTGATTACAGCTTCTCTTGTTCCACCTTTAATAAACCCCACTGTTTATTGCATAAGGACTAAAGAAATCAGGAAACGATTATCAAATGTATTTTTGCATAGGAAAACAGTACCAAATCCTTAAGTCAATTTCAAAAGGTTCATCATCTTAGTTTACCTTGTTTCGATTGCTTTTGGGACAATTTTTTCTCACATTAGAAACTGTAAACCAAAGCATTGAAATGCAGATTATTAATTTACTGTTTTCAGTAATAATAGAGGAAATATCAGCTTTTAAATGACAGTATTGtgcctgttgtaaatattaaatgtaatgttgaacacaaaaaaacaaataaaaacctaccttttaaacaaaattgtttataaattaatttttatacgTAAAAGTTAAATAATAGCCATAATCTAAACAAAGTTTGATGTCCCTCAGTCCCAAATGTAAATCAAttgctatttttattaaaacGTCTGTTCACAGGGGTCTAAACCACTCTGGAGGGTAATGAATCAGTTAGAAGACCCTTGTGTAAGGTACAAGTATTATTGCTCATTAGTTTCATTGAGCCTCCAACCTGCTATACAAAATACATGTAAACAGTTACTCGCTGCTTGGATACTCTATTTAGGTCTTTAAATTAATATGcacagatatatttataatacatgACATACTAGAATACTTGATTCTGCTTGCTTAATCAGAATATTGAGCATTATTTCATAACATTATTAATGCTCATCTCAACATCATGCAGGCCACTTTAAACAAACATAATGCAAAATGCTGTGACATAAACCAAGAAAATATTCACTTTAAGGTGAAGTTTGTTATGTTAATGGAGAGATTTCAGTAATCTTGTTAACTCAGCATGAGTCCGTTAATTTGTGTTGGGTGTTTTATTGTGCAAATCATTTTGAAATGTGTCTTTGGACTGCAGAGCAAGAATTGATTGACGTGCAAAGTTTAAAAATTGTTATTCAAATTGGttgttttattttgagttttatatacacatttactttcatttattattattttgtttattgttctttatatatatatatttgtctacATGTTACAATACCAAACTCTAATATGGGATAATCCATCATTAGTAAGGCCTAATGATATAAAATGGTTCCCAAAAACTGTTACAGCGCTAGTGATCTTGTCGAATATTAACCAGTATCCACTAGATGGAGGCATTCATTCTTTCCTCTTCAGCTTTggagtttttgtttcttttttttttttataattttatgtatcatttcaattaatatttgattaaacatactTAAATTGATTATATTTTTCTGGTTTGGACCTTTATTTGGTTTTGTTACTTTATTCTTGAGCCAGGAGGTTGTAACAGGAGATATTGGAGAAAGTGTGTTTTGGCAGATTTTAATCAGATCTTTTGATTTAGCTGAACAGGCCTGTAAATACCTTGCAAATATTGTGTAGTTTAtctttctttattgttattttgtcactttcaTCTTTATGctggattttcttttttactttttgccAATTAAATCACATTTCACCTTCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-63 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000102329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004381 True 2712 mRNA 0.33 1 36272178 36274889

Neighbor

gene id symbol gene type direction distance location
XLOC_002295 or106-12 coding upstream 4739 36265164 ~ 36267439 (+)
XLOC_002293 COA4 coding upstream 72127 36197968 ~ 36200051 (+)
XLOC_002292 or108-1 coding upstream 75960 36194527 ~ 36196218 (+)
XLOC_002291 or108-2 coding upstream 85832 36184751 ~ 36186346 (+)
XLOC_002290 or108-3 coding upstream 92087 36178713 ~ 36180091 (+)
XLOC_002297 or106-10 coding downstream 2639 36277528 ~ 36279141 (+)
XLOC_002298 or106-9 coding downstream 10679 36285568 ~ 36287107 (+)
XLOC_002299 BX088524.1 coding downstream 12952 36287841 ~ 36288503 (+)
XLOC_002300 or106-8 coding downstream 19752 36294641 ~ 36296945 (+)
XLOC_002301 or106-7 coding downstream 24652 36299541 ~ 36300976 (+)
XLOC_002289 BX088524.3 non-coding upstream 111891 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 627043 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 627380 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 857901 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 1030150 35236348 ~ 35242028 (+)
XLOC_002315 CU694807.1 non-coding downstream 451349 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 530147 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 685687 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 872780 37147669 ~ 37147784 (+)

Expression


Co-expression Network