RNA id: TCONS_00004381


Basic Information

Item Value
RNA id TCONS_00004381
length 2712
RNA type mRNA
GC content 0.33
exon number 1
gene id XLOC_002296
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36272178 ~ 36274889 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGAAGGAGTGTTAGAGAGATTTGCATATTAAATTCTCATTTatgttgctttatttaaaaagttataacaaggggaattattttgaaaatactttcTTTATTCTTCAGAATGAATGAAACTCTTTTTGTACTTTTGTTAAAACTGTACTTCAATCTTAACAGTTTTCATCACCTGTACCTTACAGAAACTGCCTGCATCTTTCTGCCCTTTTCTTTTACAGGAGCTTTTTTTCTCTGCATATATGAGTACATTGAGGATGTAGTTGCCAGCTTTCAACTACACTAACTGGGTACTAACTGTATGTAAGAGATTTGGTAATTGATAATGGCGAATGAAACTTTTGTGAAAAATGTTGACAGCTTTATAATTACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTTGGATCGCTCATCTTGATAACCTACATACTCATACTGCTTGGGAATGGCATCAATCTGTTTATCATCTCGACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCCGTTGTTGATGTAATGTACTCCTCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACTGTTTCATTCTACTCTTGCATCTCCAGGACATACTTCTATCATGTTGGTGGTTTCACAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGACTTATTGCTATTAGGCTTCCATTAAGATACCACAGCATTGTCACAAATTCACGAGTCTTTCTGCTTATTTTTCTGACCTGGCTCGCTGGTTTTGCTGTTATAGGTTACGTAATATCAGTTTCGGACAATGTCCCATACTGTCAGCCAATCATCAAATATGTGTTTTGTGAGTATGCTTCCATGATCAGAGCTGCTTGTGTTGATCCTGAgccatatttttttatatctgcGATGTTAAATATGTGGCTATTGTGTGGACAGTTCCCTTTTATATTGTGCACATATGCTGTTCTGGCATATAGTGTGACTAAACTGGCCAACAATTCAAACAAAAAGCAATTGATCAACACTTGCTTGAGTCATATAATTGTTCTCTCCAGTTTTTATGCTCCAAAGCTTGTCTCTACCTTACTCACTCGAATAGGAGTTGTGTTGACTTTAACAGAGCGAAATGCAATTCTGATTACAGCTTCTCTTGTTCCACCTTTAATAAACCCCACTGTTTATTGCATAAGGACTAAAGAAATCAGGAAACGATTATCAAATGTATTTTTGCATAGGAAAACAGTACCAAATCCTTAAGTCAATTTCAAAAGGTTCATCATCTTAGTTTACCTTGTTTCGATTGCTTTTGGGACAATTTTTTCTCACATTAGAAACTGTAAACCAAAGCATTGAAATGCAGATTATTAATTTACTGTTTTCAGTAATAATAGAGGAAATATCAGCTTTTAAATGACAGTATTGtgcctgttgtaaatattaaatgtaatgttgaacacaaaaaaacaaataaaaacctaccttttaaacaaaattgtttataaattaatttttatacgTAAAAGTTAAATAATAGCCATAATCTAAACAAAGTTTGATGTCCCTCAGTCCCAAATGTAAATCAAttgctatttttattaaaacGTCTGTTCACAGGGGTCTAAACCACTCTGGAGGGTAATGAATCAGTTAGAAGACCCTTGTGTAAGGTACAAGTATTATTGCTCATTAGTTTCATTGAGCCTCCAACCTGCTATACAAAATACATGTAAACAGTTACTCGCTGCTTGGATACTCTATTTAGGTCTTTAAATTAATATGcacagatatatttataatacatgACATACTAGAATACTTGATTCTGCTTGCTTAATCAGAATATTGAGCATTATTTCATAACATTATTAATGCTCATCTCAACATCATGCAGGCCACTTTAAACAAACATAATGCAAAATGCTGTGACATAAACCAAGAAAATATTCACTTTAAGGTGAAGTTTGTTATGTTAATGGAGAGATTTCAGTAATCTTGTTAACTCAGCATGAGTCCGTTAATTTGTGTTGGGTGTTTTATTGTGCAAATCATTTTGAAATGTGTCTTTGGACTGCAGAGCAAGAATTGATTGACGTGCAAAGTTTAAAAATTGTTATTCAAATTGGttgttttattttgagttttatatacacatttactttcatttattattattttgtttattgttctttatatatatatatttgtctacATGTTACAATACCAAACTCTAATATGGGATAATCCATCATTAGTAAGGCCTAATGATATAAAATGGTTCCCAAAAACTGTTACAGCGCTAGTGATCTTGTCGAATATTAACCAGTATCCACTAGATGGAGGCATTCATTCTTTCCTCTTCAGCTTTggagtttttgtttcttttttttttttataattttatgtatcatttcaattaatatttgattaaacatactTAAATTGATTATATTTTTCTGGTTTGGACCTTTATTTGGTTTTGTTACTTTATTCTTGAGCCAGGAGGTTGTAACAGGAGATATTGGAGAAAGTGTGTTTTGGCAGATTTTAATCAGATCTTTTGATTTAGCTGAACAGGCCTGTAAATACCTTGCAAATATTGTGTAGTTTAtctttctttattgttattttgtcactttcaTCTTTATGctggattttcttttttactttttgccAATTAAATCACATTTCACCTTCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-63 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDART00000163833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 47298 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 47300 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 68577 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 820098 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 857901 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 387800 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 387803 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 393107 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 426951 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 430735 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004380 mRNA upstream 4739 36265164 ~ 36267439 (+) True XLOC_002295
TCONS_00004375 mRNA upstream 72127 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004374 mRNA upstream 75960 36194527 ~ 36196218 (+) True XLOC_002292
TCONS_00004373 mRNA upstream 85832 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004372 mRNA upstream 92087 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004382 mRNA downstream 2639 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004383 mRNA downstream 10679 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004385 mRNA downstream 19752 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004386 mRNA downstream 24652 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004387 mRNA downstream 28078 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004370 other upstream 111891 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 111991 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 627043 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 627380 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 973479 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004384 other downstream 12952 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004398 other downstream 164417 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 387780 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 685687 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 872780 37147669 ~ 37147784 (+) True XLOC_002321

Expression Profile

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