XLOC_002297 (or106-10)


Basic Information

Item Value
gene id XLOC_002297
gene name or106-10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36277528 ~ 36279141 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004382
GCGTTAGGGAGATTCACATATTAAATTCTCATTTatgttgctttatttaaaaagttaaaacaagggggaattattttgaaaatactttaTTCTTCAGAATGAATGAAACTCTTTTTATACTTTTGTTAAAACTTTACCTTAATCTTTACAGTTTTCATCACCTGTACCTTACAGAGACTGCCTGCATCTTTCTGCCCTTTTCTTTTACAGGAGCTTTTTTTCTGTGCATATGTGAGTACATTGAGGATGTAGTTGCCAGCTTTCAACTATACTAACTGGGTACTAACTGTATGTAAGAAGTCTGATAATTGAAAATGGCAAATGAAACTTTTGTGAAAAATGTTGACAGCTTTATAATTACTGGATTTGATCACCTGCAGAACCAAAAGCTTCTTGGATCGCTCATCTTGATATCCTACATGTTCATATTACTTGGGAATGGCATCAATCTGTGTATCATCTCGACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGACATAATGTACTCCTCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACGGTTTCATACTACTCTTGCATCTCCAGGACATATTTCTTTAATCTTGGAGATTTAACAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGACTTATTGCGATTAATCTTCCTTTAAGGTATCACAGCTTTGTAACAAACTCACGAATATTATGGCTTATTTTTCTCACCTGGATCTTCAGTTTTGCTGTAATAGGTTTTTTGACATATGTGGCAGACACTCTTCCATACTGTCAGCCTATCATCAAATACGTGTTCTGTAGTTATTCTTCTCTGGTCAGAGCTGCCTGTGTTGATCCTGAACCCTATTTTGCCATTTCTACAGTATATAGTATGGTGACATTGTGTGGACTTTTCCCTTTTATTCTGTGCACGTATGCTGTTCTAGCATATAGTGTGACTAAACTGGCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATATAATTGTCCTGTTCAGTTTTTATCTACCTAAGATCGTCTATATTTTACTAACTAGAATAGGACTTGTGTTGACTTTAACAGAGCGAAATGCTGTTTTGATTGTATCCTGCTTTGTTTCTCTTTTAGTAAACCCCACTGTTTATTGCATCAGGACTAAAGGAATCAGAAAAAGAATAACAGATATATTCTTGTACACACAAAAAATAACCAAGTAATTCAAAATAAATTTCAAACCTTTTAATCTTATATGTGATTTGTGGGGATATTACTCGTTATTGTTTTGGTATTGTTTTTGTGAAGCTTTGGCTCATgatagagactaagccaataGATAGAAATGCTaatgttgatttatttgtttaatgggGAAAGGGGGAATGTTTTGTAAAGACAGTATTGACTAAAATGTAAATCTTGAACAGAAGAATATTCTCTGCATTGACAAAATTCTTGTTAAACAAATTTGTTTGTAGATGCAGTGTATTCCCTATTTATATGCAAAAAtgcaataatcataataaaaatgagtCTTGTTCCTCAGTCCCAACTGTAATATCAGTTATGTATTTCAGT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-62 Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000091143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004382 True 1614 mRNA 0.34 1 36277528 36279141

Neighbor

gene id symbol gene type direction distance location
XLOC_002296 or106-11 coding upstream 2639 36272178 ~ 36274889 (+)
XLOC_002295 or106-12 coding upstream 10089 36265164 ~ 36267439 (+)
XLOC_002293 COA4 coding upstream 77477 36197968 ~ 36200051 (+)
XLOC_002292 or108-1 coding upstream 81310 36194527 ~ 36196218 (+)
XLOC_002291 or108-2 coding upstream 91182 36184751 ~ 36186346 (+)
XLOC_002298 or106-9 coding downstream 6427 36285568 ~ 36287107 (+)
XLOC_002299 BX088524.1 coding downstream 8700 36287841 ~ 36288503 (+)
XLOC_002300 or106-8 coding downstream 15500 36294641 ~ 36296945 (+)
XLOC_002301 or106-7 coding downstream 20400 36299541 ~ 36300976 (+)
XLOC_002302 or106-6 coding downstream 23826 36302967 ~ 36304931 (+)
XLOC_002289 BX088524.3 non-coding upstream 117241 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 632393 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 632730 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 863251 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 1035500 35236348 ~ 35242028 (+)
XLOC_002315 CU694807.1 non-coding downstream 447097 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 525895 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 681435 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 868528 37147669 ~ 37147784 (+)

Expression


Co-expression Network