XLOC_002291 (or108-2)


Basic Information

Item Value
gene id XLOC_002291
gene name or108-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36184751 ~ 36186346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004373
ACTGTGAAGCAGAGGTGAAAACTGCAGAGAAGACAGCAGTATGGTCTGTTTTCATTCAGTGTATGACCACAGCAATCATTGGAACATATTAAGTGTATCTTTCATTGTTATTTTTCTTGTTGCATCCTGTGATAAAGGCCTGTGTGATAAATGAATAGATTTGTACAGCGTTGGGTGTTTGTGAATGTTTCTCGCAGGATTCTCTAGCAGTGAAAGCAACACACACTGCAAAGAAGATTGTATAAAGAGGAAAGCAATGCAAAACGCCATCAGTTCTGGTCAAAACAGCTCCATCATACAGCCTGCAGGATTTTACATTGTCGCATTGAGTTCAGTGCCTTACAGTAATGTCTATGTCATGTTCCTCACCGTGCTGTATGTGATCACAGTCATATGCAATGTCTTTCTGATCTCCATTATTGTCTATGATCAGCGTCTGCATGTGCCAAAGTTCATGGCTGTTGGTAATCTGGCTGTGGTTGATCTTATTCTCAGCACTTCTCTGGTGCCTGGCATGATTAAGATTTACATCGTTCTTGACAATTTTATGCCGTTCAAGCTGTGTCTTGTGCAAATGTACACTTACTATACGTTTTTAAAAGTAGAGGCACTTTCCCTGTGTATTCTCTCTTATGACCGGTTCATTGCCATCTGTTTTCCTTTAAGACACGAATCCATAAACACAAACACCAGAATGACTTATATTATCTGTGTAAGCTGGTTCCTTTCTTTTAGTATATCACTATACGGCACTTTATCCATCCCAGCTCTCTCATTCTGTGGCTCTCTCCAGGTCAACAGCTATTTTTGTGATTACGCTCCTGTTTTAAGAGTTGCCTGCAGCGACACGGCATCTCAGTTTAACTTTGGCACTGCCTCAAATATACTTTTTGTTATTATaccatttgcttttattttcctCACATACGCGGGTATACTGTATGCTGTTTTCAGAATGAAGAATAACCAGAGCCGCTTTAAAGCACTGGCCACATGCACTGAGCACCTCATATTAGTGGCCCTATTCTTTTTTCCCATTGTGATTATCTTCAGTCTTGGGTTATTTGGGTATATTATAAACTCTAACGTAAGATCAGTGTGTTTATCTATGACATCTCTCCTCACACCTTGTGTGAATCCTATCCTCTACTCACTGAAAACCAAGGAGATTCGAAGCAGGGTGTATTTTTTGTTACCGCAGAGACTCTCTGTTCATCCTCTCAAAAGTGCACAATAATGTATTACATAATTGTGGCTAATGTGTAAAGAGCTGAGATTATTCATGAGAATATTTGTAATACTGCTTTAAAAGGTTTTGGTATTACTTGGTGTTCATATAAAAATGCATtcgaatgttttaaataaaacaaatgtattgctaacttttttaaaaactggTATGCCTTTATTTGCATCATTTCGTCATAAGCACAACTTTGTATTTTCTATCATGCAACATCTCTGTGTGCTTCAGAAGGTGTAAAATGTCACATCATGCATCTATAGtttttgttctctctctctcaaagtTCATAAATAATATATCAATGATTAAAGAATGTGAATATTTACAGCGCAATATTCTCTATCTACAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-65 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000100546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004373 True 1596 mRNA 0.38 1 36184751 36186346

Neighbor

gene id symbol gene type direction distance location
XLOC_002290 or108-3 coding upstream 4660 36178713 ~ 36180091 (+)
XLOC_002289 BX088524.3 coding upstream 24464 36158967 ~ 36160287 (+)
XLOC_002288 waif2 coding upstream 28093 36150911 ~ 36156658 (+)
XLOC_002287 smyd4 coding upstream 78605 36092564 ~ 36106146 (+)
XLOC_002286 katnal1 coding upstream 121337 36037977 ~ 36063414 (+)
XLOC_002292 or108-1 coding downstream 8181 36194527 ~ 36196218 (+)
XLOC_002293 COA4 coding downstream 11622 36197968 ~ 36200051 (+)
XLOC_002294 NA coding downstream 14838 36201184 ~ 36381043 (+)
XLOC_002295 or106-12 coding downstream 78818 36265164 ~ 36267439 (+)
XLOC_002296 or106-11 coding downstream 85832 36272178 ~ 36274889 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 539616 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 539953 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 770474 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 942723 35236348 ~ 35242028 (+)
XLOC_002299 BX088524.1 non-coding downstream 101495 36287841 ~ 36288503 (+)
XLOC_002315 CU694807.1 non-coding downstream 539892 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 618690 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 774230 36960576 ~ 36960690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01084872_00000058_00000687 NA coding CI01084872 null 58 ~ 687 (-)