RNA id: TCONS_00004406


Basic Information

Item Value
RNA id TCONS_00004406
length 963
lncRNA type sense_over
GC content 0.45
exon number 2
gene id XLOC_002313
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36662640 ~ 36673388 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacataaaagttgACTAAACTTAATTTTAAGGATATTGCTGCTGAGCTTTTTTTTTGAGTTGACCACTTTCAACCCTCATACTGCACTTGGCTAGATTTAAGTTGAACTCAAAGTTGtcaactttttcttattttttctttacttATTTTTTCATACAGTAAACCAGCATTCCACAATGTCACATAACTTTTATAAACGTTTAAAACCCACATTTGGGAAAAATAAGCGAGGtaactttaatttttgggtgaactcctGCTTTAAATGCCACCTCCTAATTTGAGTGTCAGCTGAGTCATCTGGAGGAATCAAAAAGGCATGACGTGGACCAGAATCAACATGCAGCAGCAAAAAACAGATCATCCTTTTCTTTTCAGGAGGACCGTTTGCAGTTGCACCCATACTGACgtcaacttttatttatttctcttttacaCTAGCAACGTAAGCAGGTCCAGGCCTCCATGACTGACCCGGGATAACCTGAAGATGCAGCTTCCCCTCCACTGTGATTCTGTAAAGTTTTTCCATCCACCTTTTGTTCTGTACAGATTCAGGGGGAGAACAAAGCCTCCACCAACATGGGCCGTGGTCCGGTGAAATATCGAGGGGTCTTTGGTACGATCAGCACCATGGTGCGAGTGGAGGGGCCACGCAGTCTCTACAGCGGCCTGGTGGCGGGACTGCAGCGTCAGATGAGCTTTGCTTCTGTACGCATCGGCCTCTACGATTCGGTCAAGCAGTTTTACACCAAAGGCTCTGATCATGCTGGGATTGGCAGTCGACTGATGGCTGGTTGTACGACTGGAGCCATGGCCGTGGCTGTGGCTCAACCCACTGATGTAGTGAAGGTCCGGTTTCAGGCTCAGGTCAGCGCTGGGAGCAGTAAACGTTACCATAGTACTATGGACGCATATCGGACCATTGCAAAGGAAGAGGGGTTTCGTGGTTTGTGGAAAG

Function

GO:

id name namespace
GO:0009409 response to cold biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:1990845 adaptive thermogenesis biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0017077 oxidative phosphorylation uncoupler activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004405 lncRNA upstream 1785 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004378 lncRNA upstream 286953 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00004379 lncRNA upstream 322128 36202577 ~ 36345868 (+) False XLOC_002294
TCONS_00005924 lncRNA upstream 325543 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA upstream 443116 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004409 lncRNA downstream 32806 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 36590 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004411 lncRNA downstream 57204 36726238 ~ 36733011 (+) True XLOC_002315
TCONS_00005926 lncRNA downstream 136002 36805036 ~ 37063934 (+) False XLOC_002317
TCONS_00005927 lncRNA downstream 136039 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00004401 mRNA upstream 11303 36650222 ~ 36656693 (+) True XLOC_002312
TCONS_00004400 mRNA upstream 204281 36458563 ~ 36463715 (+) True XLOC_002311
TCONS_00004397 mRNA upstream 212011 36439293 ~ 36455985 (+) False XLOC_002310
TCONS_00004399 mRNA upstream 212017 36441124 ~ 36455979 (+) True XLOC_002310
TCONS_00004396 mRNA upstream 311354 36354863 ~ 36356642 (+) True XLOC_002309
TCONS_00004407 mRNA downstream 26563 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004408 mRNA downstream 26613 36695647 ~ 36710620 (+) False XLOC_002314
TCONS_00004412 mRNA downstream 72468 36741502 ~ 36749651 (+) False XLOC_002316
TCONS_00004413 mRNA downstream 72468 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004416 mRNA downstream 414620 37083654 ~ 37126561 (+) False XLOC_002319
TCONS_00004398 other upstream 225149 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 379493 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 507709 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 507809 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 1022861 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004415 other downstream 291542 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 478635 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 1819674 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1879055 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 2014632 38683666 ~ 38683780 (+) True XLOC_002342

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01012247_00000024_00000534.mRNA True 409 mRNA 0.56 2 CI01012247 24 ~ 534 (-)