RNA id: TCONS_00005926


Basic Information

Item Value
RNA id TCONS_00005926
length 1090
lncRNA type read_through
GC content 0.46
exon number 7
gene id XLOC_002317
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36805036 ~ 37064390 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACGATTAAGGCCACGCCCACTTATAAACGGCTGACACATGGACACATGCCGTCTAGCGTCCAAGGTCCAAACCTGGCCCAAACAGAAGCAAATAATCAGTGTGAAGCAATTATAACCTTTTATAATCGTTAATACTTTCGATTACACTGAATGCTTCACAGTTAGTATTGACAAGAGGAAAATTTCATCATCAACTTAACTTAGTTTAGCTTCGATACGGCTTTATTACACAGCTCGTTTGAGTCTCTGCAGTCTCCAGAAGGCCTCGAACGTCAGCGACAATCACGGTTTATGGCGTTTGATCATAATATTTGACTGTGTTTTGTGAAAGAGGCACACATATAATGCAAATTTGCAAACAAACGTTTGTTGAACGTTGAAGCAGCCAGACGTCATCTGACAGAAGCTACTTCACTAAATGACCTTTGTGGACTCCAGCAGACCAGTTTGTGGAACGTTAATGAAGGTCTAGTAGGACCCAGGAGAGGCGGCAGTGTGAATACAAGATTTTTCCTTCTTGGTTTGGGATGAGGGAGGACAGGCTCTGACAGCACATGTCTCCCATAGCAACGCAAGAGCTTTAAAGTCCAGCCGTGGCTCTGTCACCCTGTCAAATCAGCGCAAAGGTGCAGTTTGGTGTCCTGCAGTTCAGCTGCCAGTCGCTGGCATTTCTTCTTTAACTGCTGGACTGATCGCTGGGACTCCTCCTGGTCAGCCTGCAAGTCTGCTAACtatgaagaaagaaaaagaaagagagacagGaatcATCATCTCCATCGTCCATCTCTCCATTGAGGTCTGAGGCTCGGAGAAGTCTGGCCTCCATGATCTCCATCTCCATGGActctgtttgtttcttcagagcGTCAAACTTCACCTgtgtttcaggaaaaaaaaaagacaacagGGCCATAGTAACTAAAGAGTCGCTGCAGGAGTGTTTCCTCAGACCCTCCAGGCTGTAAAACCTCCTCCTCCATCAGCCAGAACAGACCTCTGGCTTCATCAGTACGAGACAGAgtttcagatgacaaatccactaggggGCGATGTCTACACTTTTGCGTATCTAAAATGTGTTACCTAGG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035270 endocrine system development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0003157 endocardium development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0030878 thyroid gland development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:1901210 regulation of cardiac chamber formation biological_process
GO:0060322 head development biological_process
GO:1901219 regulation of cardiac chamber morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008475 procollagen-lysine 5-dioxygenase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004411 lncRNA upstream 72025 36726238 ~ 36733011 (+) True XLOC_002315
TCONS_00004410 lncRNA upstream 98189 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004409 lncRNA upstream 99319 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004406 lncRNA upstream 136002 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004404 lncRNA upstream 136313 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004420 lncRNA downstream 81164 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005929 lncRNA downstream 414311 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 436312 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 436312 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 436541 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004413 mRNA upstream 26522 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004412 mRNA upstream 55385 36741502 ~ 36749651 (+) False XLOC_002316
TCONS_00004407 mRNA upstream 93335 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004408 mRNA upstream 94416 36695647 ~ 36710620 (+) False XLOC_002314
TCONS_00004402 mRNA upstream 131648 36662640 ~ 36673388 (+) False XLOC_002313
TCONS_00004416 mRNA downstream 19720 37083654 ~ 37126561 (+) False XLOC_002319
TCONS_00004417 mRNA downstream 19728 37083662 ~ 37126562 (+) True XLOC_002319
TCONS_00004418 mRNA downstream 73530 37137464 ~ 37167441 (+) False XLOC_002320
TCONS_00004419 mRNA downstream 81073 37145007 ~ 37167451 (+) False XLOC_002320
TCONS_00004422 mRNA downstream 109095 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004403 other upstream 136002 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 362189 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 516533 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 644749 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004421 other downstream 83735 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 1424774 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1484155 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1619732 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2628443 39692377 ~ 39699487 (+) True XLOC_002355

Expression Profile

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