RNA id: TCONS_00004422


Basic Information

Item Value
RNA id TCONS_00004422
length 539
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_002322
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37173029 ~ 37256989 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTGCTAACTTTCTTACATTGATTCTGATTTAATTCAGGTTTTTTCGAAGTGTTTTAAGTATTAATTTAGATCACATTACATACAGCACTTATGCTAGCTTGAGGAGAGGTCACCGAAAGGTTTGTTTTTGGATTAAATAAACCCTCATATGATGTCTACAAGAGGTTCCTGTGGACGTGAAGATGGAGGAGACGTTCACTAGACACCCTGACTGGTCAAGCTGATGAAGTACATCTGTAAGCAGCTGCAGTGTAAGCAGAAGGTGCCAGACACTGAGCGGCCGGCGGCGCTGAACAGCTACCCACGGCTGGAGGACTGGTTACGCATCATCAACGTCAGACCTGCGCTtatagagGCGGTGAACGTGAAGCTGTCATTGGATGCTCTGCTGCAGATGCCCATCATTCAGGTGAAGGAAACCATGAGACGGCTGGGATCCACTTCAGAGGACTGTACCAGGCTGTGTGCCGCCCTCAGCTGCTTAAAGAGTGCCTCTGAGTCAGGGGAGTTTAAAGAGGACAGCGGTTGTTGGTTCTC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007265 Ras protein signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-34 Predicted to enable protein kinase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human KSR1 (kinase suppressor of ras 1).

Ensembl:

ensembl_id ENSDART00000136510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004420 lncRNA upstream 5578 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005928 lncRNA upstream 108639 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005926 lncRNA upstream 109095 36805036 ~ 37063934 (+) False XLOC_002317
TCONS_00005929 lncRNA downstream 250866 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 272867 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 272867 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 273096 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004431 lncRNA downstream 276477 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004419 mRNA upstream 5578 37145007 ~ 37167451 (+) False XLOC_002320
TCONS_00004418 mRNA upstream 5588 37137464 ~ 37167441 (+) False XLOC_002320
TCONS_00004417 mRNA upstream 46467 37083662 ~ 37126562 (+) True XLOC_002319
TCONS_00004416 mRNA upstream 46468 37083654 ~ 37126561 (+) False XLOC_002319
TCONS_00004413 mRNA upstream 394515 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004425 mRNA downstream 41475 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004426 mRNA downstream 173459 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004427 mRNA downstream 272855 37500234 ~ 37784024 (+) False XLOC_002326
TCONS_00004429 mRNA downstream 272889 37500268 ~ 37779748 (+) False XLOC_002326
TCONS_00004432 mRNA downstream 699721 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004421 other upstream 25245 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 212339 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 503995 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 730182 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 884526 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 1261329 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1320710 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1456287 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2464998 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 2533375 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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