RNA id: TCONS_00004376


Basic Information

Item Value
RNA id TCONS_00004376
length 362
lncRNA type antisense
GC content 0.42
exon number 6
gene id XLOC_002294
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36201184 ~ 36381043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCACGTTAGAAAGGGGAGAGGTAAGACTCAAGATCAGGCTACGGTTCATTTGCAGTATATTAGAATTGGAGTCATGCTTCAATTTTGAACCACACCAATCAATGACCAAAGTTGGAAAATCAGCCACCAGACTTGCAGATAAGCGCATctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGCTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGGTCTTTCATGGATTCCATGACCTCCTCTGTCTTCAGAGTGTATATGATGGGATTCAGCATAGATGGTATTACCTGTCTCAAAGAGTTGTTAAATATTCGTGTGTTTGGATCAA

Function

GO:

id name namespace
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000170227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 749114 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 786917 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 789975 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 811497 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 908963 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00004404 lncRNA downstream 437809 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 437812 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 443116 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 476960 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 480744 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004375 mRNA upstream 1143 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004374 mRNA upstream 4976 36194527 ~ 36196218 (+) True XLOC_002292
TCONS_00004373 mRNA upstream 14848 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004372 mRNA upstream 21103 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004369 mRNA upstream 44536 36155366 ~ 36156658 (+) True XLOC_002288
TCONS_00004380 mRNA downstream 40284 36265164 ~ 36267439 (+) True XLOC_002295
TCONS_00004381 mRNA downstream 47298 36272178 ~ 36274889 (+) True XLOC_002296
TCONS_00004382 mRNA downstream 52648 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004383 mRNA downstream 60688 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004385 mRNA downstream 69761 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004370 other upstream 40907 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 41007 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 556059 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 556396 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 902495 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004384 other downstream 62961 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004398 other downstream 214426 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 437789 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 735696 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 922789 37147669 ~ 37147784 (+) True XLOC_002321