RNA id: TCONS_00005925


Basic Information

Item Value
RNA id TCONS_00005925
length 2393
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_002294
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36201184 ~ 36381043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGAGGTAAGACTCAAGTACGTAAACTGTCATGATTTTTACTGGagttttgtaaaaataataatgattattacttACTCAAGGAATATGAAGTTATCATATTGTCGTCATATTTTATCGTTCTAATCGAAAGTGTGCATTTATAAGGACTAAAACGAGCGTTTTCAAAGAAGAGTGAGTGTGTCagcatattttacaatatttcttagtgaatagttaaaaaataatgcatataAATAGATATAACATTACCTTCACGTTTCAATTTCTTTATATTTTGTGAAACAACTGATACTCCAGTGTTCAAGACATTACTACTTCAAAGGACTTGCCAAGTCTAAAATACGAGCTAACATCATGTTAAGGCCTTCTAACAAATGATACCGCTAACATCAGTGATGTGTATAAATACATCAGTTCACAATGGGCATTTTTAGGACACTGTGAATAtcaagttgttttattttttatatatttttttactactGTGGTTTCTGTTAAATGAGGTATAAGTGCCCTGTAATGATAGGCCTGTCAAAAGAGGCCTACACCTCCCGCCTCCATTTTCAAGCGgattgaagaaaaaaagaagcaaaaatgtCTCCCAAAGTAATTTATAAATGGGTAAATTATTCCCCAAAATatttgtctttatatatatacagtactatAAATCTCAAAGTCCCTAACCAACCAATTGAATCAAAGAAGACAGAGCTTtactgtttactgttttttttgtaCACTGATTCATGAGCCCATTTTATAAGTAAAAGTGTGTAACTAGTTCTTGCTGATTATTTCACAATGTTTGTTTTTCAGGATCAGGCTACGGTTCATTTGCAGTATATTAGGTATTAATATTATGGTCAGACAATGTAGTTAGCATTATCAAAGTGACATATTTGGCATTAATGAAACATAATGCCAAATATGtcattatattatttaacataCTTTTGCTATAAAATTCAATCCACAATCAGAATCCTAAAACAATTTGTAATTGCTTTATCACCATGTTTTCTAAAGTGTATGCTAGTTTTTgctatatttcattatttacacATTAATTTAAAATGGCAGAATTGGAGTCATGCTTCAATTTTGAACCACACCAATCAATGACCAAAGTTGGAAAATCAGCCACCAGACTTGCAGATAAGCGCATGTTAAATTGAGAATCTATTACTGTTATGTTGTATGTCAGTAAAGCAATACACTTATTCTGGGTCTTCATGGCCATACCAATTGGCAAAAGTTGCTAAACATTAGCTTTTGAGCAGAATCAGAAATTTGAATGTTTAAATATAGTttaacttgacatttaaaaactgttaatgcatttttttgtttgttttttttagctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAAgtaagtaattaatttattttgagtTCATTAATCagtttattataaaacataaaagttATACAACAGAAAGTCTAATGTGAAATAAATTAAAGTCTaaagcatacattttttttggttTTCCTTTATTTTACTCAAACATGCACTTTATAGGGATTGTTCACGGAAAGCTGAAaattgccatcatttactcagcctttgcTTGATCCAAACCTGTTAAACTTTATTTGTTGTTGAACAAAAAAGGTGGTATtttagaagaaagctgaaatcctgtaactagtgattttcatttcatgtttgtttttctacaatataagttaatggttacagattttcattcattcattttccttcagcttagtccctttattcatcaggggtcactacagcggaatgaagcgccacCTTATCAACCATATGTTTTaagcaacagatgcccttcccgctgcaacccagtacttggaaacgtccatacacactctttcacacacatactttatgaacagtttagtttattcaattcacctttagtggatgtatttgaactgtgggggaaactagagcttctggaggaaacctacgccaacacggggagaacatgcaaactccacacagaaatgccaaatgacccagccgggactcaaaccagcgactttcttgctgtgaggcgacagtgctaaccactgagccaccttgtcgccctgaaggttttcagcttttttcaaaatatcttctttagtgttcaacagaatgaagAAAGTCAGAAAGGTTTGGCACCACCTGAGGGTTAGTATATAGTGAATACATTTAAATCTTTAAGTGAACTATCACTTCAAGTAATTTTGCTAAGCTCAGTAGGTTTGTAGGTTTTtgtatggttttaaaaaatgcataattaGATGTTTGGTTCTTTTATCACAGCTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAG

Function

GO:

id name namespace
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 749129 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 786932 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 789990 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 811512 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 908978 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00004404 lncRNA downstream 459088 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 459091 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 464395 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 498239 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 502023 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004375 mRNA upstream 1158 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004374 mRNA upstream 4991 36194527 ~ 36196218 (+) True XLOC_002292
TCONS_00004373 mRNA upstream 14863 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004372 mRNA upstream 21118 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004369 mRNA upstream 44551 36155366 ~ 36156658 (+) True XLOC_002288
TCONS_00004380 mRNA downstream 61563 36265164 ~ 36267439 (+) True XLOC_002295
TCONS_00004381 mRNA downstream 68577 36272178 ~ 36274889 (+) True XLOC_002296
TCONS_00004382 mRNA downstream 73927 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004383 mRNA downstream 81967 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004385 mRNA downstream 91040 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004370 other upstream 40922 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 41022 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 556074 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 556411 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 902510 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004384 other downstream 84240 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004398 other downstream 235705 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 459068 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 756975 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 944068 37147669 ~ 37147784 (+) True XLOC_002321

Expression Profile

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