RNA id: TCONS_00004356


Basic Information

Item Value
RNA id TCONS_00004356
length 3593
RNA type mRNA
GC content 0.53
exon number 18
gene id XLOC_002280
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35468978 ~ 35528389 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTATCAGTAATTGGCTGTGAACATGCAGAGTCACCACAATGTGTCACGGCAGATGATCCTGAGATCCAGCCACACCACGGTGTCTTCATCTCCAACACTGCTGGAGTTATTACTTTACACCCCAATGGAAACATCTGCAGTCTGGATGGAGCTTCAGTCACCGGTCCAACAAAGCTTACTCATGGGTGCACTGTTTGTCTGGGTGAATCTTTTTTTCACTTCAACCACCCAGAAGAGTTGAATCGCATGAGGAACATGCTGCCAGAAAAGACTGCAGGTCCTGCGCTGTCCCTCAATACGGatACAACAAAGTTCCATTCCAATGGCGGCTCATTGGTTGGATCCAGCCTCCGCGGCACACGGTCCAAGGCAGAGCTTCAGGAGTTGATGGAGAGCCTGCAGCGGAGGAAATCTGCTCTGGAGGCCAGCTTAAAGGCTACTGCTGACCGTGGGTACCTCACATTATCTCCACCTCCCAGCCCACAGTCGGCTTCTTCCTATCTACAGGACCGTCCACCACTTTCAATACGAGTCCCTTCCCCTTACTCACCCTCCAGTAGTTTGAGCATGCCGCCATCTCCCCACCAATCAGAGCGCCCTATAAGTCCAGTCCCAAACCAAACCCGTGCCAGACACCAATCGCAGGACAGCCTGTTGCTTTGCCACTCTTCAGAAGGGCGGCATCCCAACTCTTCAAACCCACTCTTAACTATGTGGAATGGCTCTTCATCCTCCTACGGGAACGATGCTCTTCTTTCATCTCGCAGAGGTCCAAGCGGGGCGGCCAGCATGCCCTCCAGCCCTCGTTTGGGGCGCCGTTTGTTAGCACGAGATGGCGAGTCCCCCATTGAACCATCACTTCGCCAAAGAAAATACTCCACCGGCTCTTTGAATGGCCTGGGCGGACATAGTCGCTCTCTGCCCCGGTTGTATCGAGGAGACGCCCCAATGCTGTCTTTGCCACCCCGACGTACCACCAAACCACGGCGCAGCTTTCCATCCATGGAGAAGCCTCCAGATGTGACTGTGATTGCCAATGTGAACAGCAGCTCACGGAGGGCCAGCCTCTGCTCTGTGGGATCTGCCCCATGCTTGGATCTGGGCGTTGGAGAAAGGCGACTGTCGTTTGGGAAAGGAGGCCTGGGGCCCGGCATGGGGCCGAGGAGGGGCAGCATCAGCTCTCTCAGTGGAAAAGAGGAGCTCAGAGATTACCATCAGAGACAAAGAGATGAGCGACTACGAGAACAGGAAGTGGAGCGACTGGAGCGTCAGCGTCTGGAGACCATCCTGTGCCTGTGCTCTGAGCTGGGACGCACTGAAGTGAGTCGCATGGAGAGCGAGCCGAACACCTCTGCTGTTTCAGACCTGCAGAAGATCAACCGAGAGCTGGAGAAGCTTCAGGTGTCGGACGATGAGTCGGTGTTCTCTGAGTCTGCCTCTGTGTCTGTGGACGGAGGAGTGTTTCTGGGTAAAAGTCGAGGAGAGATACTGAACCAGAGACAGCGCAGAGTCAGCGGACACAGAGAGAGCAGGCCTCAGTCTCCCAGCAGCAGTATGAGGAGCACAGCACCCTCCCCATCACCACACCTCCGCTGCAAGGTGTCAGAAGACATGCAGCTGAGGCAGGAAGTGACACGGATAGAAGAGGAGAGGATTCAGGTGCTCAACAACATTGAGGAACTTGAACAGAAGATCAGAGATCTGGACACCCAGATGGACGAGTCAAtcagagaggtgtgtgtgtgtgtttgtgtgtgtgtgcacgagaAGCTTTGTGTGTTGTTAACTGAGCTGTCATGTTTAGTAGACATGGAAGTGGAGAGAGCACTTTTAGATGGCGAGCAGGAGGCAGAAGTGACTCAACTACAGAGTGATAAAGAAATGCTGGAGCAGCTCAACGAAAAAATGGGCAACATGGAGAAGAACTCTCAAAGGAATCAAACTCAGGACAAAGCCCTGTTGGAGGCTGAGAGAGATAAAGTAGAGAGGCTAGCTGAGCTGATCTCAGAACAGAAGACCCAGCTGGACTCCTGTCCTGAAGCACTGAAGGAGCAGCTCCAGAATCAGCTGTCCAGGGACACTGAAGCTTTGGAAGCGGAGAAGAAGCGCTTTGAAGATATGGAGTTTCAGCAGCTGGAGAAGGAGAGCTGTCAAGATGAAGAGACGGAGTCGCAGATGCAGCAGCTCCTCAGAGAGATCGCAGAATACCAGAGATCAGTCGTCTCTCGCAAGGAGAGGCTACTTACCCTGAAGAAGCAGTCGACTCAgattacccagcaggcacagcgGGAGAAGGAGAACTTCTTGAAGGAGAAGAGCAACCTCATTTATATGCTGCAAAGAGAACGAGAGAACCTTTCGTCTCTGGAAAGGAAGTACGCTGAGCTGACAGGTGGACAGGCGTTTCCTCTTAACCCTGTGTCCATGAAGGAGCACTTTCGCACACTGGAGGAGAGGAGACGGAGCAACGGCATTAAAGAGGGCGGAGTTCTGCTGAGTGACAACGGAACGCCCCGTAAAAGAGAAAGGCAGAGCTCTGGAACTCTAAACTCTGCCCTTAATCGCAGTCTGTCTCCCAAGCCTCATATGCCACTGTCTCAGAGCTCTAGCTGTGGCAGCGTCCTTCCCCGCACACTGTCAGTTAACTCTCGAGACCTGGACACCCGACGCCTGCTTAAGGCTGCAGGTCAGCTGTATCTCAATGACGAGAGGCAGAGGATGAGCGAAATGTCCAACAGGGCCGTTTCTGAGACAAATGTCTTCCTGGAGCCGTTTCACTACCTGGATAATGGACACAACTTTGACACAATGAGTGTGGACAGTACAGAGAGCCTGGAGACCAGCATTTCCGCATGTTCACCAGACAACATCTCCAGCGCCAGCACAGCTAATATGGCAAAGATAGAGGAGATGGAGCGCATGCTGAGAGAAGCTCAAGCTGAGAAGCACAGGCTGCTGGAGCACAGGGAGCGAGACATGGAGCTGCGCAGACAGGCTCTGGAGGACGAGAGGAGAAGAAGAGAAGAGCTGGAGAGAAGACTGCAGGAGGAGACCAGCAGAAGACAGAAACTAGTGGAGAGAGAGACATACAGTCTTATTCGTAAGCGAGAGTTGATTAGATctgtgctgtttgtgtgtgtccagTCTCGTCCGCTGACTCGGTATCTGCCGGTAAGGAAGGATGAATTCGACCTGCGAGGACACATCGAGGCGGCCGGACACCATCCAGAGACCTGCTTTCATCTGGCCATCACTGAGAAGACCTGCAGGGGCTTCCTGGTCAAGATGGGAGGCAAAATCAAAACCTGGAAGAAGCGCTGGTTCGTCTTTGACCGTAATCGTCGGACACTGGCATATTATGCTGatAAACACGAGACCAAAATGAAGGGTGTTATTTATTTCCAAGCCATTGAAGAAGTGTATTACGACCACTTGAAGAACGCACACAAGAGCCCGAACCCCTCTCTGACGTTCAGTGTGAAGACACATGACCGTGTTTATTACATGGTGGCTCCTTCCCCAGAGGCCATGAGGATCTGGATGGACGTTATCGTCACTGGAGCCGAGGGATATACACACTTCCTACTGTGA

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0045180 basal cortex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-9 Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB2 (pleckstrin homology like domain family B member 2).

Ensembl:

ensembl_id ENSDART00000131984

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 16898 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 54701 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 57759 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 79281 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 176747 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005924 lncRNA downstream 672795 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA downstream 672805 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA downstream 672809 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004378 lncRNA downstream 672810 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00005925 lncRNA downstream 672820 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00004355 mRNA upstream 16787 35439952 ~ 35452191 (+) False XLOC_002279
TCONS_00004353 mRNA upstream 31354 35417099 ~ 35437624 (+) False XLOC_002278
TCONS_00004354 mRNA upstream 39018 35422802 ~ 35429960 (+) True XLOC_002278
TCONS_00004350 mRNA upstream 107612 35347993 ~ 35361366 (+) False XLOC_002276
TCONS_00004352 mRNA upstream 107612 35358675 ~ 35361366 (+) True XLOC_002276
TCONS_00004359 mRNA downstream 25830 35554219 ~ 35580086 (+) True XLOC_002281
TCONS_00004362 mRNA downstream 424143 35952532 ~ 35959571 (+) False XLOC_002284
TCONS_00004363 mRNA downstream 424679 35953068 ~ 35959294 (+) True XLOC_002284
TCONS_00004364 mRNA downstream 498187 36026576 ~ 36031367 (+) False XLOC_002285
TCONS_00004365 mRNA downstream 501148 36029537 ~ 36032038 (+) True XLOC_002285
TCONS_00004347 other upstream 170279 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004342 other upstream 312450 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004338 other upstream 459541 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other upstream 459882 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004335 other upstream 517446 34951056 ~ 34951532 (+) True XLOC_002266
TCONS_00004360 other downstream 116330 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004361 other downstream 116628 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004370 other downstream 630578 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 631223 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 759452 36287841 ~ 36288503 (+) True XLOC_002299

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU296517 True 1547 lncRNA 0.34 2 CI01000062 3880964 ~ 3882537 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_16975753_16997470.mRNA True 3833 mRNA 0.51 18 CI01000304 16975254 ~ 16997486 (+)
eurasian perch (Perca fluviatilis) TU296517 False 1967 TUCP 0.38 3 NC_053133.1 11416023 ~ 11418476 (+)