RNA id: TU491273


Basic Information

Item Value
RNA id TU491273
length 428
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G427843
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15713909 ~ 15714336 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGATGTATTTACATCACATCCACTCTAGTGCAATATTAATTTTTTTTCACCATTCAAAAAAAAAATAAAAAAAATAAATCACCATTCATGAGTATTGGAGACTCATGTTATTCAGACTACCTCTACGAACTCTATAGGCCAAATCTGATGTTACACAACTGTTTTTCTTGAACAGCAAAATGAGGATCATAATAGGCTCAAAGTACATGAATTCCCCAGTGTCTCAAAAATACCATGTGTTTGTAGACATACCCACCACCACACACATTGAAGTATGCACACATGTTCCCTACCCCATATCAAGATTCACACAAAGATTACTGATTCCAGGTACAGTCACTATCATGCACAGATACCTGAGAAAAGCTTTCATTAAAGAGCAACTGTCTCTGCTATTAGACCACTGAACAGATAACATGGAGCCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491205 lncRNA upstream 6512 15705318 ~ 15707397 (+) True G427777
TU491202 lncRNA upstream 10374 15622304 ~ 15703535 (+) False G427776
TU491204 lncRNA upstream 10374 15701287 ~ 15703535 (+) True G427776
TU491236 lncRNA upstream 46039 15655415 ~ 15667870 (+) True G427808
TU491239 lncRNA upstream 54851 15658518 ~ 15659058 (+) True G427811
TU491274 lncRNA downstream 506 15714842 ~ 15715121 (+) True G427844
TU491336 lncRNA downstream 25922 15740258 ~ 15741104 (+) True G427906
TU491352 lncRNA downstream 94867 15809203 ~ 15812033 (+) True G427915
TU491354 lncRNA downstream 98767 15813103 ~ 15814423 (+) True G427917
TU491329 lncRNA downstream 100313 15814649 ~ 15818064 (+) True CI01000304_15817532_15846675
CI01000304_15500233_15509862.mRNA mRNA upstream 203193 15500233 ~ 15510716 (+) True CI01000304_15500233_15509862
CI01000304_15483378_15486113.mRNA mRNA upstream 227523 15483378 ~ 15486386 (+) True CI01000304_15483378_15486113
CI01000304_15472687_15483327.mRNA mRNA upstream 230582 15472687 ~ 15483327 (+) True CI01000304_15472687_15483327
CI01000304_15467093_15471138.mRNA mRNA upstream 242427 15467093 ~ 15471482 (+) True CI01000304_15467093_15471138
CI01000304_15462162_15465511.mRNA mRNA upstream 248398 15462162 ~ 15465511 (+) True CI01000304_15462162_15465511
CI01000304_15723867_15741978.mRNA mRNA downstream 9531 15723867 ~ 15742863 (+) True CI01000304_15723867_15741978
CI01000304_15776859_15777750.mRNA mRNA downstream 62523 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15779082_15779951.mRNA mRNA downstream 64746 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15785399_15786785.mRNA mRNA downstream 71063 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15817532_15846675.mRNA mRNA downstream 101440 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
TU490061 other upstream 763317 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1383023 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2135062 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 3274823 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 171118 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 368894 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 790526 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1041610 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1296394 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile