RNA id: TU491239


Basic Information

Item Value
RNA id TU491239
length 505
lncRNA type intronic
GC content 0.42
exon number 2
gene id G427811
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15658518 ~ 15659058 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTATCCACCAATTTTCTTACAAATTTCTCTTGTGTAATATGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAAGAGGACCAATAAATCAATGAATGAATGAAGCAGGAGGTCAAGCGGTGTGTCATCATCCTTTCCTCTTACTCCAATTCAAATAATTTTTTCTTCAGCTCTTAAAAAGTCTTCTCCTGTGCATGAATGTGAATGGGCCGCTCCCTTCGGCTCCAGTCAGGACAGGCCTCTGTTGGCAAAGGCTGTTGGGTAGACGTCATCCATCTAGAGCAGACCTTTCCCTGAACCCCAAAACCGTTGTTTGTTTCTACACACTAGGAGGTCATGAATACAATGCATTATGGGATGGCAAGTGCCAGGCCACTCAATCACTATGGTTGTGCAAGCGTGCGTATATGTATTCTTTATGAACCCACAGTACGCAGCCCAACCCTCAAGCCAAACACCAGCCACCACATCAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491175 lncRNA upstream 83300 15574948 ~ 15575218 (+) True G427752
TU491156 lncRNA upstream 84530 15573669 ~ 15573988 (+) True G427750
TU491155 lncRNA upstream 89603 15568685 ~ 15568915 (+) True G427749
TU491154 lncRNA upstream 90215 15568094 ~ 15568303 (+) True G427748
TU491152 lncRNA upstream 91187 15567103 ~ 15567331 (+) True G427746
TU491204 lncRNA downstream 42229 15701287 ~ 15703535 (+) True G427776
TU491205 lncRNA downstream 46260 15705318 ~ 15707397 (+) True G427777
TU491273 lncRNA downstream 54851 15713909 ~ 15714336 (+) True G427843
TU491274 lncRNA downstream 55784 15714842 ~ 15715121 (+) True G427844
TU491336 lncRNA downstream 81200 15740258 ~ 15741104 (+) True G427906
CI01000304_15500233_15509862.mRNA mRNA upstream 147802 15500233 ~ 15510716 (+) True CI01000304_15500233_15509862
CI01000304_15483378_15486113.mRNA mRNA upstream 172132 15483378 ~ 15486386 (+) True CI01000304_15483378_15486113
CI01000304_15472687_15483327.mRNA mRNA upstream 175191 15472687 ~ 15483327 (+) True CI01000304_15472687_15483327
CI01000304_15467093_15471138.mRNA mRNA upstream 187036 15467093 ~ 15471482 (+) True CI01000304_15467093_15471138
CI01000304_15462162_15465511.mRNA mRNA upstream 193007 15462162 ~ 15465511 (+) True CI01000304_15462162_15465511
CI01000304_15723867_15741978.mRNA mRNA downstream 64809 15723867 ~ 15742863 (+) True CI01000304_15723867_15741978
CI01000304_15776859_15777750.mRNA mRNA downstream 117801 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15779082_15779951.mRNA mRNA downstream 120024 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15785399_15786785.mRNA mRNA downstream 126341 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15817532_15846675.mRNA mRNA downstream 156718 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
TU490061 other upstream 707926 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1327632 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2079671 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 3219432 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 226396 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 424172 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 845804 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1096888 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1351672 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile