RNA id: TU491202



Basic Information


Item Value
RNA id TU491202
length 1388
lncRNA type read_through
GC content 0.34
exon number 2
gene id G427776
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15622304 ~ 15703535 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTTTTTTTTTTTTTTTTGTAATTTTCCATAAATGTTTATTCTGAAAATATACAAAAGTTTAAAGAATCGGGATTTCATGGACATCAATGAAGGCTGATATAAGGATGGACACTGCAGCATTTATTGCATATTCACAACTTAAAAGGCGATATGTCACAATCCTTGGTTAAATGTCAGCATGTAATTGCTTATTATCCACCAATCAAGAGCTGCAGGTCCCATGAAAACATTTAAATACACAATCACTATAAAAACTTTATTCTCTCAGGTTAAATATGATTGCATACATGTAAAACATTTTGGCACTTGAATTCAGGTTAATTGCTATTAAAAAAAAAAGGCTTGTTTGATTTGGCATGCAAACACATGTCTCTCCAGCATTTGCTTTTGAAATAAAGGCCTGATACTTGTAACTGGGACAAAATGTTGATGTCATGTAAGGCTACATGGTGAAAACTGATCTTATTTGAAGGCTGCAAAATGTATGTGCAAACTTATATATGCAAAATTAATACTTCTGTGGTAAATTATCAATAGTGTTACAGAAAAATGACCAGCATTCATTAGTATTCTGATAATACTGTACCATCACACATTTACAGGTATTCATTATCATCTTTACCTTCTAAAATTCACTTTTACCTCCTCTTTTACCTCCAAGCTATGATCAAATGGGATCACTTTCTTAAAAGCATCATATCCTGTCTTTTATTCCAACTTATTATTCCAACAACTGAATCACAATTTTCCTTTTTGGTTAGTTTCTATATAACAGAAGGCCAAAATCAACCTCTACTCTTTGGTTACACAACCACCCTTTGGATTTTTAGTAGGGCAAAACTCCCAATAATTGCATTGCTTGTGCATTAAAAATAATATAATGGGGCAAACACTTATATCTAGTACAGAATTTTAATTAAATACATTACTTGTAATATATATATTGCCATATATTGAGGAATATACGTCCACCAGCTGAGAAATCTAGATTATACTTGGCAGCAGTCTGCGAAGTACAGTATTTATTGCGGATTGCCACCCAGTGGCGATGAGCAGAAGTGACACAGGCTAGGTTCCCTGCATCCCATGTAGTACAGTACATTCAGCACAGTATACAGTATTGAATGAACAGAAACCGTATTGATTTCTTTCACCTTCTCTGAACAGGCACTTTGGTTGGGAGGCAGATGTTCCAGAGTGTTCTTTTATAAAGTTATTATTATTCCTCAATGCTTTCTTTCATTGAATTAGAAGGGTGTCACTCTCATTTAGACCAAAACGAGTCTTGTAATTGTCAAAGAGAGACTTAAGGGACCTGATGTACATGGCATGGTACATATCTATGACTTCCTGACTCGGCTCCTCAATTTTTGGAACTGTGATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491175 lncRNA upstream 47086 15574948 ~ 15575218 (+) True G427752
TU491156 lncRNA upstream 48316 15573669 ~ 15573988 (+) True G427750
TU491155 lncRNA upstream 53389 15568685 ~ 15568915 (+) True G427749
TU491154 lncRNA upstream 54001 15568094 ~ 15568303 (+) True G427748
TU491152 lncRNA upstream 54973 15567103 ~ 15567331 (+) True G427746
TU491205 lncRNA downstream 1783 15705318 ~ 15707397 (+) True G427777
TU491273 lncRNA downstream 10374 15713909 ~ 15714336 (+) True G427843
TU491274 lncRNA downstream 11307 15714842 ~ 15715121 (+) True G427844
TU491336 lncRNA downstream 36723 15740258 ~ 15741104 (+) True G427906
TU491352 lncRNA downstream 105668 15809203 ~ 15812033 (+) True G427915
CI01000304_15500233_15509862.mRNA mRNA upstream 111588 15500233 ~ 15510716 (+) True CI01000304_15500233_15509862
CI01000304_15483378_15486113.mRNA mRNA upstream 135918 15483378 ~ 15486386 (+) True CI01000304_15483378_15486113
CI01000304_15472687_15483327.mRNA mRNA upstream 138977 15472687 ~ 15483327 (+) True CI01000304_15472687_15483327
CI01000304_15467093_15471138.mRNA mRNA upstream 150822 15467093 ~ 15471482 (+) True CI01000304_15467093_15471138
CI01000304_15462162_15465511.mRNA mRNA upstream 156793 15462162 ~ 15465511 (+) True CI01000304_15462162_15465511
CI01000304_15723867_15741978.mRNA mRNA downstream 20332 15723867 ~ 15742863 (+) True CI01000304_15723867_15741978
CI01000304_15776859_15777750.mRNA mRNA downstream 73324 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15779082_15779951.mRNA mRNA downstream 75547 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15785399_15786785.mRNA mRNA downstream 81864 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15817532_15846675.mRNA mRNA downstream 112241 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
TU490061 other upstream 671712 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1291418 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2043457 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 3183218 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 181919 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 379695 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 801327 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1052411 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1307195 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile