RNA id: TCONS_00004390


Basic Information

Item Value
RNA id TCONS_00004390
length 2251
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_002305
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36322894 ~ 36325144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAACTCATCTGTTCAACGCCTTTATTTATACGGTTTATTTTGTTGATAGCGTTTTAATCAACTTTACATAACATGTAAATATGATATATAAGGACGAAATCCTAAAAAGaataacttaaaatgttttatattttattcatacaaTTTTTTTGAAATGAGTGAAACACTCTTTGTGTTTCTTTTGAAACTATACTTTAACTTTTACAGTTTTCATTACCTGTATGTCACAGAGACTGCCTACATCTACCTGCCTTTTTCCTTCACAGGAGCTTTTTTTCTCTGCATATACAAGTACATCAGGACTTTCACTGATTTTGACCTGACATTTGTATGTAGTCTCTTTTAATATCTGCTTAGCAATACCGTAAAAAATGGCGGCTGAAAATTCTACCATGAAAAATattgacagctttataatcaCTGGATTTGATCACCTGCAGAACCAAAAGCTGCTTGGATCCCTCATCTTGATAACCTACATACTCATACTGCTTGGGAATGGCATCAATCTGTGTATCATCTTGGCTGACAAACATTTATACAAACCAATGTACATATTAATGTGTAATTTAGCTGTTGTTGATATAATTTACACCTCGACCTGCAGCACAACCATGATATCAGTGCTGCTGGCTGAGGATAAAACTGTTTCATACTACTCTTGTATCTCTAGGATGTTCTTCTATCATCTTGGTGATTATACAATATGCTTGGCTCTGACATTAATGGCAATAGACAGACTTATCGCCATCAAGCTTCCATTAAGATACCACAGCATTGTCACAAATTCACAAACATTACTTTTTATTGTACTGACTTGGATCATTGCGATTGCTATAATGGGTGTTTTGACATCAATAATAGACAATGCCCCATACTGTCAGCCAATCATCAAATATGTGTTCTGTGATTATCCTTCAATGATCAGAGCTGCTTGTGTTAATCCTGAGCCATACTTTTTCCTGCCTGCAATGATTAATCTGTGGTTTTTCTGTGGACTGTTGCCCTTTGTTATCTGCACGTATGCCGTTCTGGCATATAGTGTGACTAAACTGTCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATTTAATTGTACTGTTCAGTTTTTATGCACCAAAACTGGTCTCTTACTTGCTCACTCGAATAGGAGTTGTGTTGACTTTAACAGAGAGAAATGCAATACTGATTATTTCATCTCTTCTTCCTGCTTTAATAAACCCTGTTGTTTATTGCACCAGGACTAAAGAGATCAGGAAACGATTAGCAGATGTGTTTTTGCACAAAAAAGTAGTACCAGGTCAATTTAAGGTTATATCGTAATACATTCTATTCATTTGCATGTTTAACATTGATGATGTCTGTTGTTTAGATGCGTTTATGCATTTGCTTAAGTCAGAATCTAGGCTAAAACAGATGTACTGATGAAATGAAGAAAGACTAGGGGAAGTGAATTccagtattgaaataaataaatgcctcAAAGCTTAAAATATCACTAAACCTACACCTAAATCTCTGAAAACATGTTTAAACAGCTGTGATGTACAATGTGGCCCACATGTGGTAAACTCAAATAACATTATACTTGTATATCCAAATACCCAATATGCTTTTTAAGGCTGTCGATTGTAAttttgtttagatatttttaaCATTACAATTAATGGTGAAGGTTAAAGGTTATAGTCAATGTTATTTTGTGTGCCATCATGAACATGAATAAAGGATACTGCCAATTCTTACGTCACCTGTTTGGTTACACATCAGTCTGTATTCTTCAGGGTCTGTCTGGTTTCTCCAGAGAGCAAATTAAGAGCATGTAGCAAATATGTTGACACTGTTCAGACAAACAAGAATGACAGTGTTTACATGAAACCCTTGACATCAAATCTCTAGTGTATAATTCTTAGAGCATCTCTTCTAGCAAAACAGCACataattatcaaatatttttctgttaaaaatgtaaaatgttacttAATTGAATTACTAATAAGTAATTTAAGAATAAGCTATTTCCACAAAAATTGCCAAGCATTAATAATGCATTGGCCCTTGCTTATGGTTCAGTGATTTGACAGGTTGTGTTTTGGCAATTTATGCTATTTTGAAAGGTACTTGGATGGAGTTCTTAGTTTACTTGGAGAGGGGTCAGACCTTTAGTCTTCTTGTCAAagaacagaagaaaaaatgttgaaGTACTTTATCTGCAAttactgtgtttactgtgttaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-56 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDART00000166299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 98014 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 98016 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 119293 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 870814 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 908617 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 337545 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 337548 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 342852 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 376696 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 380480 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004389 mRNA upstream 6136 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004388 mRNA upstream 12337 36309072 ~ 36310557 (+) True XLOC_002303
TCONS_00004387 mRNA upstream 17963 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004386 mRNA upstream 21918 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004385 mRNA upstream 25949 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004391 mRNA downstream 3558 36328702 ~ 36330485 (+) True XLOC_002306
TCONS_00004392 mRNA downstream 9358 36334502 ~ 36336537 (+) True XLOC_002307
TCONS_00004393 mRNA downstream 20032 36345176 ~ 36346363 (+) True XLOC_002294
TCONS_00004394 mRNA downstream 24081 36349225 ~ 36350040 (+) False XLOC_002308
TCONS_00004395 mRNA downstream 24089 36349233 ~ 36350693 (+) True XLOC_002308
TCONS_00004384 other upstream 34391 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 162607 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 162707 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 677759 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 678096 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004398 other downstream 114162 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 337525 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 635432 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 822525 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2163564 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile

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