G383791 (LOC106566282)


Basic Information

Item Value
gene id G383791
gene name LOC106566282
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26657866 ~ 26658150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU436044
CTGTATGGGAGAGATAGCAGCAGCGGGTGGGGTTTTCAGAGGGCTGGGGCTGAGGGGTGTACGGGCAATCGTTGTGGTAACTGCTGGCACGGCTGCTGTGGGGGAGGTTGGGACAAGGCCTGCAGTGGAGGCGTTGTCAAAGCTCTTGATAAGGGTCTTGACGGTGGGAGAGGGctcagaggaggtagaggagcgtCGGCTGAGACCCATGCCCTGCCTCAGGGCAGCTAGGTCCCTCTCAACCGCATTCATGTAGTTATACACCCTGcccctctcctcatcctg

Function

NR:

description
PREDICTED: cytospin-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436044 True 285 lncRNA 0.60 1 26657866 26658150

Neighbor

gene id symbol gene type direction distance location
LOC110522865 LOC106567246 coding upstream 155582 26437517 ~ 26502284 (+)
pnpla7a NA coding upstream 260413 26393838 ~ 26397453 (+)
LOC110522858 LOC106563124 coding upstream 271196 26385129 ~ 26386670 (+)
LOC110523509 LOC106567323 coding upstream 288065 26365281 ~ 26369801 (+)
LOC110523508 LOC106567317 coding upstream 305918 26313498 ~ 26351948 (+)
pus1 pus1 coding downstream 195921 26854071 ~ 26877217 (+)
noc4l noc4l coding downstream 219366 26877516 ~ 26884592 (+)
LOC110523521 vps29 coding downstream 226737 26884887 ~ 26887645 (+)
atpbb LOC106566318 coding downstream 231824 26889974 ~ 26892420 (+)
LOC110523522 arpc3 coding downstream 234322 26892472 ~ 26895096 (+)
G383778 NA non-coding upstream 22741 26634713 ~ 26635125 (+)
G383752 NA non-coding upstream 27542 26593544 ~ 26630324 (+)
G383774 NA non-coding upstream 28281 26625991 ~ 26629585 (+)
G383758 NA non-coding upstream 72892 26584569 ~ 26584974 (+)
G383755 NA non-coding upstream 77332 26580247 ~ 26580534 (+)
G383792 NA non-coding downstream 510 26658660 ~ 26660664 (+)
G383886 LOC105014832 non-coding downstream 152645 26810795 ~ 26816187 (+)
G383931 NA non-coding downstream 200695 26858845 ~ 26859212 (+)
G383936 NA non-coding downstream 207190 26865340 ~ 26865620 (+)
G383895 NA non-coding downstream 243638 26901788 ~ 26905762 (+)
LOC110523503 NA other upstream 471176 26174884 ~ 26186710 (+)
G382186 NA other upstream 1432136 25225442 ~ 25225730 (+)
G381239 NA other upstream 1881437 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 2813521 23838502 ~ 23844345 (+)
G383794 LOC106566282 other downstream 3688 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1017202 27675352 ~ 27719165 (+)
G385053 NA other downstream 1048564 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1246317 27904467 ~ 27904731 (+)
G385805 NA other downstream 1758455 28416605 ~ 28417555 (+)

Expression


Co-expression Network