G385679 (LOC106566140)


Basic Information

Item Value
gene id G385679
gene name LOC106566140
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28145817 ~ 28161980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU438067
CTGCAGGCTGGACAGGTCGTTGTTGTGTCGGTCCTCGATGTCATTCAATTGCCTCTCCAGTGACTCCCTGGTTCCACGGACGGACTCTAACTCCACGGTCTTGGACTGAAGCTGGCGACGGTAGTCTGCTATCTCATCACGGGCGGACTTGATTGCATCTTTGTTTTGTGCCGCAGCATCAGTGAGCTTGGAATAGCGGCACATGAACCAGTCCTCCACCTGCTGCAGGTTCTGGTTGGAGTGGCCCTCGAGCTGGGTGCGGATCTCCCGGAGCGCCTCGGTGATGTCCGTCTTCTGGATGTCTTTCCTCTCCATGGTCACCTGCGACGCCTGCACCTGGGCGAACAGGTCGCTCACCTCTTCTGCGTGGTTGTTGCGGATAAAGGCAATCTCGTCATGCAGTGACTGAACTTTCTTCTCCAACTCTGACTTCACCAAATCAGAGTCGGTCATATCTTTTTTCAACGCCCGGATGATGCCTTCCGTCTCATCCCTGATGCGGGCTTCCTCATCGAAGCGGTCCCTAATTCTCTGGATGTCATCCTCGACGTGGTCCGTGTCGAGCTGGATCTGCGCTTTATCGTGGTGAATCTGCTCCAGCATGGAGCGCAGCTCCTGGAGTTCCTGGTCGTATAAATCGCCTAGCTGGGATTGTGACACCTGCTTCTGCCGCAGCGTCTGGATCTCCTCTTCGATCTGGCTGTTCTGCTGCTCCAGGTAGTGCACCTTGTCGATGTAACCGGCGAATCGGTCGTTGAGCCCCTGGAGCTGCTCTTTCTCGTTGGAGCGCTTGTAGTCTCCGTTCGTTTGATTGAAATCAACGCTGTCGGCGGAGCTGAGGAGTGTGGAGCTGTACGCTCTGGCTACCGGCACATTGACGCTCCTCTTGTAGGAGGAGGTCATCGTGGAGCCTGGGCTTGCCCGGGACCAGGACTGAGAACGGAACCCGCTGGAGGGTGTGCCAGTGGAGCGGCCGTAGGTGGTCCTACTATCCATACTTCTCCTGAATGGACTCCCTATCGTGTCCACCGGGTGGTAACTCATCCGGCCAGACCAGGGGTTGCGTGTGCAGATGGAAGGGAAGGTGTCCTACTATCCATACTTCTCCTGAATGGACTCCCTATCGTGTCCACCGGGTGGTAACTCATCCGGCCAGACCAGGGGTTGCGTGTGCAGATGGAAGGGAAGGTGTCCGAGGTGGAGGAGTGGGGCGAGTATGTGTTTGCAGGTGCGGGGTGGATGGCGCT

Function

NR:

description
neurofilament medium polypeptide-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438067 True 1247 lncRNA 0.57 2 28145817 28161980

Neighbor

gene id symbol gene type direction distance location
LOC110523534 LOC106566461 coding upstream 33038 28109822 ~ 28112779 (+)
LOC110523531 LOC106566436 coding upstream 77844 28052621 ~ 28067973 (+)
si:ch211-222n4.2 LOC106566406 coding upstream 129765 28008073 ~ 28016052 (+)
LOC110523528 nsma3 coding upstream 151394 27982645 ~ 27994423 (+)
LOC118964522 NA coding upstream 404728 27735878 ~ 27741089 (+)
ftsj1 LOC106566467 coding downstream 66033 28228013 ~ 28235500 (+)
LOC110523538 NA coding downstream 77135 28239115 ~ 28241670 (+)
LOC110518653 LOC106566474 coding downstream 95987 28257967 ~ 28261576 (+)
LOC118964581 NA coding downstream 99797 28261777 ~ 28264335 (+)
ank1b LOC106566514 coding downstream 107857 28269837 ~ 28346918 (+)
G385686 NA non-coding upstream 4901 28140426 ~ 28140916 (+)
G385685 NA non-coding upstream 5897 28139438 ~ 28139920 (+)
G385665 NA non-coding upstream 19504 28125794 ~ 28126313 (+)
G385555 NA non-coding upstream 32380 28112834 ~ 28113437 (+)
G385592 NA non-coding upstream 36434 28109165 ~ 28109383 (+)
G385693 NA non-coding downstream 1554 28163534 ~ 28178814 (+)
G385714 NA non-coding downstream 53500 28215480 ~ 28215737 (+)
G385715 NA non-coding downstream 55831 28217811 ~ 28218228 (+)
G385726 NA non-coding downstream 83258 28245238 ~ 28245543 (+)
G385730 NA non-coding downstream 89043 28251023 ~ 28251335 (+)
G385171 LOC106566130 other upstream 241086 27904467 ~ 27904731 (+)
G385053 NA other upstream 438739 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 462424 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1482204 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1685121 26437517 ~ 26502284 (+)
G385805 NA other downstream 254625 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 764297 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1579820 29741800 ~ 29763439 (+)
G387516 NA other downstream 1735006 29896986 ~ 29898134 (+)
G388019 NA other downstream 2124971 30286951 ~ 30287824 (+)

Expression


Co-expression Network