G386978


Basic Information

Item Value
gene id G386978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29397652 ~ 29398086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439489
agagaagtgaggaggagaagagggagagtggagagaagtgaggaggagaagagggagagagggaaatagaaaaGAAAACGCTTGCGTGCCGCCACTCAGGGAAGagctggaggacagagaggagaaactGTATCACTCTGAAGGAGTGCTGGAGCAGGAGCGAGTGAGTGAAGAagtgagaaggaggagaggaaactgTCCTAAACAAGGGGAATGGTAGATGTGTTGAGTTCCAGTGACGGAATCTGTGTGTTCCTGCTGCtgtgtgatgatgatgtgtctgttTTAAGTGGAGGGGGGATAAACCGCTAGACTGTAGTCCCTATAGAACATCACGGCCCCTCTGCTTTGAAAGAGGAGTGGAGTTGTGGGGGTTGGACAAATGTGACCCCCTCTTGACACTCCTTAGAGCTATAAGGAGAGGGTTATGAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439489 True 435 lncRNA 0.51 1 29397652 29398086

Neighbor

gene id symbol gene type direction distance location
mtfp1 LOC106566934 coding upstream 85324 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 135011 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 209684 29174319 ~ 29187968 (+)
LOC110523574 LOC106566787 coding upstream 231142 29140833 ~ 29166510 (+)
tmem141 tmem141 coding upstream 262169 29133844 ~ 29135483 (+)
LOC110523583 LOC106566936 coding downstream 314842 29712928 ~ 30103090 (+)
tbx5a LOC106566939 coding downstream 343777 29741800 ~ 29763439 (+)
LOC110523590 rab14 coding downstream 461523 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 707207 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 735586 30133672 ~ 30217715 (+)
G386976 NA non-coding upstream 7049 29390300 ~ 29390603 (+)
G386975 NA non-coding upstream 7537 29389838 ~ 29390115 (+)
G386974 NA non-coding upstream 8289 29389051 ~ 29389363 (+)
G386973 NA non-coding upstream 10177 29387270 ~ 29387475 (+)
G386965 NA non-coding upstream 19713 29377694 ~ 29377939 (+)
G386980 NA non-coding downstream 1528 29399614 ~ 29399843 (+)
G386981 NA non-coding downstream 1945 29400031 ~ 29400296 (+)
G386982 NA non-coding downstream 2444 29400530 ~ 29400752 (+)
G386986 NA non-coding downstream 10713 29408799 ~ 29409022 (+)
G386987 NA non-coding downstream 11849 29409935 ~ 29410157 (+)
spag8 LOC106566715 other upstream 466721 28926263 ~ 28931410 (+)
G385805 NA other upstream 980097 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1492921 27904467 ~ 27904731 (+)
G385053 NA other upstream 1690574 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1714259 27675352 ~ 27719165 (+)
G387516 NA other downstream 498900 29896986 ~ 29898134 (+)
G388019 NA other downstream 888865 30286951 ~ 30287824 (+)
G390184 NA other downstream 2562269 31960355 ~ 31960745 (+)
G390393 NA other downstream 2822095 32220181 ~ 32220533 (+)

Expression


Co-expression Network