Gene
RNA
| Item | Value |
|---|---|
| gene id | G388623 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 30840640 ~ 30840877 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU441329 | True | 238 | lncRNA | 0.47 | 1 | 30840640 | 30840877 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523597 | LOC106565929 | coding | upstream | 128980 | 30674936 ~ 30711660 (+) |
| rgs3a | LOC106565973 | coding | upstream | 344680 | 30339806 ~ 30495960 (+) |
| LOC110523600 | LOC106567149 | coding | upstream | 580335 | 30256373 ~ 30260305 (+) |
| LOC110524742 | LOC106567059 | coding | upstream | 622925 | 30133672 ~ 30217715 (+) |
| LOC110524747 | LOC106567126 | coding | upstream | 732091 | 30105293 ~ 30112442 (+) |
| LOC110522913 | LOC106565915 | coding | downstream | 125262 | 30966139 ~ 30975087 (+) |
| LOC110523608 | NA | coding | downstream | 1312031 | 32152908 ~ 32160417 (+) |
| lhx3 | lhx3 | coding | downstream | 1417051 | 32257928 ~ 32270782 (+) |
| LOC110523612 | LOC106565885 | coding | downstream | 1492625 | 32333502 ~ 32336514 (+) |
| LOC110523614 | LOC106565718 | coding | downstream | 1499999 | 32340876 ~ 32390222 (+) |
| G388617 | NA | non-coding | upstream | 10388 | 30829242 ~ 30830252 (+) |
| G388616 | NA | non-coding | upstream | 14117 | 30826300 ~ 30826523 (+) |
| G388615 | NA | non-coding | upstream | 14655 | 30825709 ~ 30825985 (+) |
| G388554 | NA | non-coding | upstream | 111458 | 30728938 ~ 30729182 (+) |
| G388483 | NA | non-coding | upstream | 204686 | 30635717 ~ 30635954 (+) |
| LOC110522910 | LOC106565903 | non-coding | downstream | 8553 | 30741854 ~ 30856071 (+) |
| G388692 | NA | non-coding | downstream | 128121 | 30968998 ~ 30969301 (+) |
| G388720 | NA | non-coding | downstream | 158894 | 30999771 ~ 31045641 (+) |
| G389395 | NA | non-coding | downstream | 539394 | 31380271 ~ 31380605 (+) |
| G388019 | NA | other | upstream | 552816 | 30286951 ~ 30287824 (+) |
| G387516 | NA | other | upstream | 942506 | 29896986 ~ 29898134 (+) |
| tbx5a | LOC106566939 | other | upstream | 1094446 | 29741800 ~ 29763439 (+) |
| spag8 | LOC106566715 | other | upstream | 1909709 | 28926263 ~ 28931410 (+) |
| G385805 | NA | other | upstream | 2423085 | 28416605 ~ 28417555 (+) |
| G390184 | NA | other | downstream | 1119478 | 31960355 ~ 31960745 (+) |
| G390393 | NA | other | downstream | 1379304 | 32220181 ~ 32220533 (+) |
| G391513 | LOC100136561 | other | downstream | 2317949 | 33158826 ~ 33162980 (+) |
| G391805 | NA | other | downstream | 2520080 | 33360957 ~ 33361341 (+) |
| G392776 | NA | other | downstream | 3306597 | 34147474 ~ 34150795 (+) |
