G396022 (kdm2b)


Basic Information

Item Value
gene id G396022
gene name kdm2b
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36965084 ~ 36965652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU449364
GCTCGTCCTCATCTTTGATGTCGAACagcatcctcttcttcctcagagGGTTGTCCTCAGGCCTGGGTCGGGGCAGCCCGCCCAGAGACAGCATGGGAGAACGTTTCTTCAGAGGAGGAGACTCCTCTGCTTTCGTTTTGGGGGTGTCATCACGCTCCGCCTTCCTCTTCACTGTGGCCACGGTTGCCGTGGTCCCAGTGGGTGATGTTGGCAGACTGGGCGGGTCGGGCTCTTCCTTGATGTCACGGTTCAATCGTGAGTCCTTCAGCAGCGACCCGGGAAGGTTGGACGCGTACTTGAACCCTGGTCCTCTTTTTTGCTTGACGGCTTTCCCTGTCTTCCCTGAATGGTTGCATTTTGGACACTCCCAGCAGTTTGGCAACTCGTCATTTACAACTCCACCAGAATCTTTCA

Function

symbol description
kdm2b Enables histone demethylase activity (H3-K36 specific); unmethylated CpG binding activity; and zinc ion binding activity. Involved in histone H2A monoubiquitination and histone H3-K36 demethylation. Located in nucleus. Colocalizes with PcG protein complex. Biomarker of acute lymphoblastic leukemia and pancreatic ductal carcinoma.

NR:

description
PREDICTED: lysine-specific demethylase 2B isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU449364 True 414 TUCP 0.56 2 36965084 36965652

Neighbor

gene id symbol gene type direction distance location
LOC110523723 rnf34 coding upstream 7443 36931737 ~ 36957641 (+)
lrrc75bb LOC106564666 coding upstream 81859 36828476 ~ 36883225 (+)
ggt5b ggt5 coding upstream 159332 36797363 ~ 36805752 (+)
LOC110522857 NA coding upstream 313334 36649948 ~ 36651750 (+)
LOC110523714 LOC106565816 coding upstream 319886 36639656 ~ 36645198 (+)
LOC110523726 LOC105014888 coding downstream 62579 37028231 ~ 37032623 (+)
LOC100653458 LOC106564569 coding downstream 74009 37039661 ~ 37048058 (+)
LOC110523727 setd1b coding downstream 95533 37061185 ~ 37084550 (+)
LOC110523740 LOC106564460 coding downstream 143297 37108949 ~ 37110258 (+)
LOC110523741 LOC106564493 coding downstream 169096 37134748 ~ 37136668 (+)
G395972 NA non-coding upstream 94056 36870818 ~ 36871028 (+)
G395888 NA non-coding upstream 216560 36743572 ~ 36748524 (+)
G395748 NA non-coding upstream 268637 36695208 ~ 36696447 (+)
G395677 NA non-coding upstream 379205 36582772 ~ 36585879 (+)
G396058 NA non-coding downstream 40001 37005653 ~ 37036550 (+)
G396069 NA non-coding downstream 82709 37048361 ~ 37048706 (+)
G396077 NA non-coding downstream 90996 37056648 ~ 37057052 (+)
G396076 NA non-coding downstream 92156 37057808 ~ 37059312 (+)
G395034 NA other upstream 663794 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 758468 36202901 ~ 36206616 (+)
you2 you2 other upstream 930317 36033260 ~ 36034806 (+)
G394910 NA other upstream 960255 35966937 ~ 36004829 (+)
G394882 NA other upstream 1059303 35905112 ~ 35905781 (+)
m17 m17 other downstream 443549 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 953042 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2348682 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2796464 39762116 ~ 39765843 (+)
G399919 NA other downstream 3476103 40441755 ~ 40442086 (+)

Expression


Co-expression Network