XLOC_002335 (acer3)


Basic Information

Item Value
gene id XLOC_002335
gene name acer3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38526496 ~ 38544426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004440
ATGGCTCCGGCGGCGGACAGGCCGGGCTACTGGGGAACACCGACTTCCACTCTCGACTGGTGCGAGGAGAATTATGTGGTCTCTTATTACATCGCAGAATTCTGGAATACTGTCAGTAACCTGATAATGATCCTACCTCCCATTTATGGAGCCATTCAGACGTGTAGAGATGGTTTGGAAGTACGCTATGTGTGGTCCTTTTTAGGACTTGCTGCTGTAGGGATTGGCTCATGGAGCTTCCACATGACACTACAGTATGAAATGCAGTTACTGGATGAGCTGCCGATGATCTACAGCTGCTGCGTCTTTGTTTACTGTCTATACGAGTGCTTCAAGCAAGAGCGTGCCGTTAACTATTTCTCAATTATACTTTTGTTGACCTTCAGTATTATTGTTAGTGtgATTTACCTGCTATGGAAAGAGCCTGTCTTTCATCAGGTCATGTATGCCGTGCTAGTGGCTTTCTTGGTGATTCGCTCTGTTTTCATAGTCACATGGGTCTATCCGTGGCTCAGAGCCCTCGGCTTTACATCATTAAGCGTCTTCCTGCTGGGATTCGTATTATGGAACATCGATAATATGATGTGTGACTCTTTAAGATCAGCAAGGCAGCAATTGCCCCCGGTGGTTGGGGCAGTTACACAGCTTCACGCCTGGTGGCACATCCTAACAGGCCTGGGCTCATATTTACACATACTCCTCAGCCTCCAGATTCGGTCAACCTACCTCAAGCACAGACCAAAAGTGAAGTTTTTATGTGGCGTTTGGCCAATGCTGCATATCGAATCTCAGAAG

Function

symbol description
acer3 Predicted to enable phytoceramidase activity. Predicted to be involved in phytosphingosine biosynthetic process. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human ACER3 (alkaline ceramidase 3).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0071602 phytosphingosine biosynthetic process biological_process
GO:0006672 ceramide metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0070774 phytoceramidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

ZFIN:

id description
ZDB-GENE-091204-155 Predicted to enable phytoceramidase activity. Predicted to be involved in phytosphingosine biosynthetic process. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human ACER3 (alkaline ceramidase 3).

Ensembl:

ensembl_id ENSDARG00000093366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004440 True 795 mRNA 0.47 10 38526496 38544426

Neighbor

gene id symbol gene type direction distance location
XLOC_002334 serpinh1a coding upstream 4786 38512270 ~ 38521710 (+)
XLOC_002333 BX000451.1 coding upstream 37667 38488708 ~ 38488829 (+)
XLOC_002332 NA coding upstream 93287 38432338 ~ 38433209 (+)
XLOC_002331 samsn1b coding upstream 98402 38417512 ~ 38428094 (+)
XLOC_002330 NA coding upstream 491661 38025045 ~ 38034835 (+)
XLOC_002336 BX000451.4 coding downstream 3663 38548089 ~ 38548205 (+)
XLOC_002337 LO018336.1 coding downstream 15606 38560032 ~ 38586660 (+)
XLOC_002338 mmp13a coding downstream 49219 38593645 ~ 38602561 (+)
XLOC_002339 mmp13a coding downstream 66315 38610741 ~ 38620514 (+)
XLOC_002340 mmp30 coding downstream 98878 38643304 ~ 38663746 (+)
XLOC_002327 NA non-coding upstream 636935 37865419 ~ 37889561 (+)
XLOC_002325 NA non-coding upstream 1047940 37478245 ~ 37478556 (+)
XLOC_002342 CU896636.1 non-coding downstream 139240 38683666 ~ 38683780 (+)
XLOC_002344 CABZ01051877.1 non-coding downstream 204840 38749266 ~ 38760444 (+)
XLOC_002346 NA non-coding downstream 539586 39084012 ~ 39087853 (+)
XLOC_002354 NA non-coding downstream 784876 39329302 ~ 39393816 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_18594197_18601935 ACER3 coding CI01000304 null 18593991 ~ 18603478 (+)