Fish Transcriptome and Expression Database

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model fish

XLOC_002336 (BX000451.4)

Basic Information

Item	Value
gene id	XLOC_002336
gene name	BX000451.4
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	38548089 ~ 38548205 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004441
TGCCACAGCCAAATCAccatgcagcccaagaccggttactcaatgaagctgagcagggctgcgcctggtcagttcctggatgggagaccacatgggaaaactaagttgctgttgaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111843

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00004441	True	117	rRNA	0.53	1	38548089	38548205

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002335	acer3	coding	upstream	3663	38526496 ~ 38544426 (+)
XLOC_002334	serpinh1a	coding	upstream	26379	38512270 ~ 38521710 (+)
XLOC_002333	BX000451.1	coding	upstream	59260	38488708 ~ 38488829 (+)
XLOC_002332	NA	coding	upstream	114880	38432338 ~ 38433209 (+)
XLOC_002331	samsn1b	coding	upstream	119995	38417512 ~ 38428094 (+)
XLOC_002337	LO018336.1	coding	downstream	11827	38560032 ~ 38586660 (+)
XLOC_002338	mmp13a	coding	downstream	45440	38593645 ~ 38602561 (+)
XLOC_002339	mmp13a	coding	downstream	62536	38610741 ~ 38620514 (+)
XLOC_002340	mmp30	coding	downstream	95099	38643304 ~ 38663746 (+)
XLOC_002341	acat1	coding	downstream	115712	38663917 ~ 38698966 (+)
XLOC_002330	NA	non-coding	upstream	513254	38025045 ~ 38034835 (+)
XLOC_002327	NA	non-coding	upstream	658528	37865419 ~ 37889561 (+)
XLOC_002325	NA	non-coding	upstream	1069533	37478245 ~ 37478556 (+)
XLOC_002342	CU896636.1	non-coding	downstream	135461	38683666 ~ 38683780 (+)
XLOC_002344	CABZ01051877.1	non-coding	downstream	201061	38749266 ~ 38760444 (+)
XLOC_002346	NA	non-coding	downstream	535807	39084012 ~ 39087853 (+)
XLOC_002354	NA	non-coding	downstream	781097	39329302 ~ 39393816 (+)
XLOC_002356	CR854987.1	non-coding	downstream	1212549	39760754 ~ 39760879 (+)

Expression

Co-expression Network