XLOC_023470 (pde7a)


Basic Information

Item Value
gene id XLOC_023470
gene name pde7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24733307 ~ 24797455 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046427
GCAGGTGGTGCATGTTCGGAAACAGCTTGCAATGTTCAGGACGAACTGAGACTGCCGTATGTAATCAGCGTAATTTATTTACCGTTTCGTGTTTTCTTTTTGACAGCATGTGCCAGCACATGCACGGCGTGGTCGCGGGGCGTGTTTTTATTCCACCCAGGCCACTTTCTTCTGGTTAATATACAGTGCTGCATTGAGTATTACGGGTGCCGTGTGTGTCTGCATTGAGAAAAAAGAGACAGCGAGAATAAATGTTCATGCACCGCAGAGCTTGAATGAAATCCGTCGTTAAACAGAGGCAACTTCCCGCACGTTTATTGAGAAATCCGCAGGATCTCTCCGTTTTCTCCTCCAAGCATCGGCATCGGGGTTTGAAGTGGTCATgccttttgttttaatttgggaGACGAGACTGCGGAGCCATTTGCACGATGATGATGATTCACGACTGGACGGAGTTTAAAAAATGAGGAAGCATTTTTTTCTAAAGATACTAAAAAGATAGAGGAGAGGCCTCGTCGTTCCGCAGGCCGTGATCTGTGCATGGGAAAAGgaagaagaaaggaagaaaacCCGAGCCTGATGAATAAAAATCGAGTGAAATGGAGCACGAGACACGCGCGTGGGGAAATATGGACCATATCAATAATGACGGCGGTGTGCGCGAGAACCAGATCGATCCAAACAAAATGAAGCACTTCGCCTCTTGAGCAtttaaactgatattttttttatttgcaatttacAGGAGAGGGGATTCCCGTGCTTTTTGAGAGTTGCAAACGGCGCTCAAGTTCCTTGCAAGTTCTCCTCTCCACCTTCTTTTGATTCCTATGGTTATTTTACTACTTTTCCTTCAGCGGCTTTGAATTATTTTCGATCCGGATCGATAGCGTTGATAATATTCAATGGAATTATGTTATCAGTTACCGGTTTTGCCTCTAGACAGGCCGGTTCCCAAACATGTTCTCAGCCGAAGGGGAGCCATTAGTTTCAGCTCCAGTTCCTCTTTATTTGGAGCCCCCGACCCGAGGCAGCTGTCACAGAGACGTGGAGCAATCTCCTATGACAGCTCTGATCAAACCGCTCTGTATATTCGCATGCTAGGAGATGTGAGAGTGAGAAGTCAGGTAGGCTTTGAACCTGAACGAAGAGGCTCGCACCCATACCTGGGCATCGATTTCCGCACTTTGCACTcacgTGCTGAGTCAGCAGGGTCGATTCCAGCTCGGAGGATCCGGAGGCTCTTCAGTTTCCAGCGACACCTGCTCTCGTCCCGTCTGCTGAGAGGAGCGCCACACCTCAACCCCCTCCACATCCTGGATGAGGACTACTGCGGTCAGGCCAAGTGTATGCTTGAAAAGGTTGGAAGCTGGAATTTTGACATTTTCCTCTTTGACCGACTTACAAATGGAAACAGTCTCGTCTTCTTGACATTTCATTTGCTGAGCCAGTACGGCCTCATCGAGCTCTTCCAGTTAGACATGGTTAAAGTGCGGCGATTTCTAGttcTGGTTCAAGAAGACTACCACAATCAGAACCCTTACCATAATGCAGTTCATGCTGCTGATGTCACCCAGGCCATGCACTGTTACCTGAGAGAACCCAAGCTCGCCCAGTCCCTCACTTCATTCGACATCCTCTTAGGGCTGCTGGCGGCGGCCACACACGACCTGGACCATCCTGGAGTCAACCAGCCTTTCCTCATCAAAACCAACCATTACCTTGCAGCTTTGTACCGGaatACCTCAGTTCTGGAGAATCATCACTGGAGGTCAGCAGTAGGTTTGCTCAGAGAGACCGAACTCTTTTCTCATCTTCCTGCTGAGGACAGCTTGAGTATTGAGAGGCAGCTGGGATCCCTGATTCTGGCCACAGATATCAGCCGACAGAATGAGTACCTGTCCCGCTTCAGGACACATCTGGACGAGAACGACCTGAATTTAGGAAACGCTTCTCATCGACACTTCGTTCTGCAGATGGCGCTGAAGTGTGCTGATATCTGTAACCCGTGTCGACCGTGGGAGCTCAGCAAACAGTGGAGTGAAAAAGTCACAGAGGAGTTCTTCCATCAAGGTGACATTGAGAAGAAGCTTAAACTTGAAATCAGTCCACTGTGTGATAGTGAAGCCAACACCATAGCCAGTGTTCAAATCGGTTTCATGACGTACGTAGTGGAGCCTCTGTTCGCTGAGTGGGCTCGTTTTTCAGACACGCGGCTCTCTCAGACGATGCTCGGCCACCTGGGCCTGAACAAGGCCAGCTGGAGCACCATGGAGCCCGAAGCGTCGGGCAGCTCGGAGGACGGAGAATCGGATCCAGCTCGATCCTCAGAAGAGCCCAGTTCAAGAGCCTTAACTCAGGGAAGCCCAGAGTCATGACACCTCCACTGCCCTCAGCCAAACACACACAGCGCCGCCcgtccccccccaaaaaaaacaaccACTGATCATTCTCCTCTTCTcttcatttgatttaatttatttcgtTTTAAAACTCTCTCATTTCCCCTTCGACATACAGCAATACATAGATACCTCATTTGGCTACTGCTGCAAGTTTTTCGTTTGTTTTCTTCCTTCTTTTAATTATTGTGATGTATTTATTTAACCTTATTTTTGGGCGTTACTAATTCAATGATGCTTTGAATAAAGACTGTAAGGGAAAATGGGGTTGGATGAATCCCCCCTCCTGTGGCTTTAAAGTGCCATTTCGAAACATTGAATTGCTCTGAAAGTCACCTTGAGTATTTATAAGACAACCGCATCAACAAAAAGAGAGACGATGTGTGAATGCATTGCGAGTGCGTTTGTGTGCGCTAGTGCTTCTGCAAATCAATCTTCCTCCTTGTGTACAAAATGTGAAGAGCCCAGTCCTTTTGCTGCCTCTGAAGACTGTTTACACACGTCGTTTTTTTCTATACGAATCATGTTAGTTCTGTGATTTATTGCCTTCGAAGCACAGATGTGAAGAACCACTTGTACATTTTTGTTTGGAAGCCTACTGCTGATGATCAACGAAATCTGTCGGACTGAAAACCCGCCATTCGTTCTCCATTGCATCTCTTTCTTGTATTTCAGACCGTTTCCCCCCCCCAGTTTTTGAAGGAACGTCGCGCAGTGAAAGGTGGCAGAGATGATGAACCCTTTGGAGCATGGAAGAAGGAATCTCGTGTAGCTCAACAAGACTCTCTGTGGATTTTGCTCAGGGTTTCACCGACCTGCTTCTTTGGAGAAACGTGGAAGTAAAGGTGCCTTTTGTAGGTAGCCCACACTCTCTCttttctctgtctttctcttctgTATTTTGTAAAGAAAGATCTCAGAATGTGTCGAAGCCACTCTCGTCTCTTCGGAAGACTGCAACACAATGCCTTAAAACTATGCACAAAGCTAAGTGACCAAACCAGCtgtcgttttcattttaaaactcaTCACATTGTCCATTTAGTGCACTGTCTGACCCTTTGCCTTTTTGTCGTGGAGTGTTTtgggtttttttgttttagtatgGAGGAGATTTGGTTTATTGAGTTGATTTTTAACATTGAACATTCCATTTTTGTGTATCGTTTTGGATTCTGTACATAATTggacaggttttttttttgtgcttctcTTGATGTTGGGAAAAGAGAAGAGGTGCTTTATTTTAGGtgatttgtatttttgttgtaaGTGCTGTAAGACTGTtgatttaagaagaaaaaaaaaaaactgtttacagtTTGTTGTAACAGCCATTTTGGGGAGACGACCTATGTGTCAAGCCATTTTGTAAAGGCTTTGCCGTATAACCTTTTTGATACATACCTGTTGCAGTTGCATTTTTGATGAATAAAACTTCACAAAATGTTTCTCTA
>TCONS_00046428
CCGTGCTTTTTGAGAGTTGCAAACGGCGCTCAAGTTCCTTGCAAGTTCTCCTCTCCACCTTCTTTTGATTCCTATGGTTATTTTACTACTTTTCCTTCAGCGGCTTTGAATTATTTTCGATCCGGATCGATAGCGTTGATAATATTCAATGGAATTATGTTATCAGTTACCGGTTTTGCCTCTAGACAGGCCGGTTCCCAAACATGTTCTCAGCCGAAGGGGAGCCATTAGTTTCAGCTCCAGTTCCTCTTTATTTGGAGCCCCCGACCCGAGGCAGCTGTCACAGAGACGTGGAGCAATCTCCTATGACAGCTCTGATCAAACCGCTCTGTATATTCGCATGCTAGcacgTGCTGAGTCAGCAGGGTCGATTCCAGCTCGGAGGATCCGGAGGCTCTTCAGTTTCCAGCGACACCTGCTCTCGTCCCGTCTGCTGAGAGGAGCGCCACACCTCAACCCCCTCCACATCCTGGATGAGGACTACTGCGGTCAGGCCAAGTGTATGCTTGAAAAGGTTGGAAGCTGGAATTTTGACATTTTCCTCTTTGACCGACTTACAAATGGTAAATATTTTGATTCTC
>TCONS_00046429
ATTTTCGATCCGGATCGATAGCGTTGATAATATTCAATGGAATTATGTTATCAGTTACCGGTTTTGCCTCTAGACAGGCCGGTTCCCAAACATGTTCTCAGCCGAAGGGGAGCCATTAGTTTCAGCTCCAGTTCCTCTTTATTTGGAGCCCCCGACCCGAGGCAGCTGTCACAGAGACGTGGAGCAATCTCCTATGACAGCTCTGATCAAACCGCTCTGTATATTCGCATGCTAGctgtgacaaacaaaacaatcaaatccTCATTCGTGTTTACACCAGGGGCTTGTGTAATATTCAAACAGCTGTTTTCAAGAGATGTGAGAGTGAGAAGTCAGGTAGGCTTTGAACCTGAACGAAGAGGCTCGCACCCATACCTGGGCATCGATTTCCGCACTTTGCACTcacgTGCTGAGTCAGCAGGGTCGATTCCAGCTCGGAGGATCCGGAGGCTCTTCAGTTTCCAGCGACACCTGCTCTCGTCCCGTCTGCTGAGAGGAGCGCCACACCTCAACCCCCTCCACATCCTGGATGAGGACTACTGCGGTCA

Function

symbol description
pde7a Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in cAMP-mediated signaling. Is expressed in several structures, including intermediate cell mass of mesoderm; mesoderm; neural crest; notochord; and tail bud. Orthologous to human PDE7A (phosphodiesterase 7A).

GO:

id name namespace
GO:0019933 cAMP-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031222-10 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in cAMP-mediated signaling. Is expressed in several structures, including intermediate cell mass of mesoderm; mesoderm; neural crest; notochord; and tail bud. Orthologous to human PDE7A (phosphodiesterase 7A).

Ensembl:

ensembl_id ENSDARG00000045305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046427 False 3862 mRNA 0.46 13 24733307 24797455
TCONS_00046428 False 581 mRNA 0.49 4 24743289 24796695
TCONS_00046429 True 548 mRNA 0.51 6 24743530 24796583

Neighbor

gene id symbol gene type direction distance location
XLOC_023469 armc1 coding downstream 9023 24701780 ~ 24724284 (-)
XLOC_023468 NA coding downstream 37550 24553793 ~ 24695757 (-)
XLOC_023466 NA coding downstream 230285 24416324 ~ 24503022 (-)
XLOC_023467 NA coding downstream 240790 24492203 ~ 24492517 (-)
XLOC_023465 pdha1b coding downstream 450880 24273371 ~ 24282427 (-)
XLOC_023471 NA coding upstream 3321 24800776 ~ 24829401 (-)
XLOC_023472 crhb coding upstream 50228 24847683 ~ 24881996 (-)
XLOC_023473 pdk3a coding upstream 146897 24944352 ~ 24959686 (-)
XLOC_023474 slc51a coding upstream 164444 24961899 ~ 24983047 (-)
XLOC_023475 zdhhc20b coding upstream 191690 24989145 ~ 25004611 (-)
XLOC_023665 dre-mir-735 misc upstream 13380506 38177961 ~ 38178027 (-)
XLOC_023461 NA non-coding downstream 634428 24095316 ~ 24098879 (-)
XLOC_023451 NA non-coding downstream 1090402 23383112 ~ 23642905 (-)
XLOC_023487 NA non-coding upstream 953181 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1233793 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1435245 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1557241 26354696 ~ 26369185 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019405 pde7a,LOC107656157,LOC107705260 coding CM030124.1 CM030124.1 19017355 ~ 19037399 (-)