XLOC_023472 (crhb)


Basic Information

Item Value
gene id XLOC_023472
gene name crhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24847683 ~ 24881996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046430
ATATAAATGCAAACTCCAGCCTTGCTTTGAAGAAGTCCTAAAAGTAATAACTTGATAGGCAGCAACTAGAAGACAGACGCGCCGCGCAAAGTTCAAAAACCATCCAAGGATTTACCAATTACGCACAGATTCTCCTCGCCACTTTTTGACATGAAGCTCAATTTTCTCGTCACCACGGTGGCTCTGCTCGTTGCCTTTCCACCGCCGTATGAATGTAGAGCCATCGAGAGCAGCTCCAATCAGCCAGCCGCGGACCCCGATGGAGAGCGGCAGTCCCCGCCGGTTTTGGCACGCTTGGGGGAGGAGTACTTCATCCGGCTCGGCAACAGAAACCCGACTTCTCCCCGATCTCCAGCCGACAGCTTCCCCGAGACATCCCAGTATCCAAAAAGAGCGCTGCAGCTCCAGTTAACGCAGCGTCTGTTGGAGGGGAAAGTTGGAAACATCGGCCGCTTGGATGGCAGTTACGCGCTCCGGGCGCTCGACTCAATGGAGAGGGAGCGCAGGTCGGAGGAGCCGCCGATTTCCCTAGATCTGACCTTTCATCTGCTACGAGAAGTACTGGAGATGGCCAGAGCCGAGCAAATGGCCCAGCAAGCTCACAGCAACCGCAAAATGATGGAAATATTCGGGAAGTAACCACGAGCGAACCCATCAGCCAaagatatttttacatttagcaCAAACATGAATACTCTGTACCATAGTGCTGCTTTTCCATCATGATCTATTTATACCGGTGACTTGTTTTATTTGTAGATATCTCAAGGAAGGCGAATAGAGTGCAGTAGGTGTATATGAATCAAAGTGTTCAGAAGCGCAACACTGTCATCACTTTCCATCGATGTTATTGTATAAGTGATCATTCAGAACTGTAGATGAAAAACGTTTGGgtttcctttaaaaaataaaaagacaatattttccagtactgtattattttatctgacagacttgAGTCTCATTGTAACATACAGTACATTGTTTAAGTTTGTTAATAAACTAATGAGCAACCATTAATTTTTGTTGTGCAAGAGAATgtcttatatttatatttttcaataaaacttTGAAAGACA
>TCONS_00046431
AAGAAGTCCTAAAAGTAATAACTTGATAGGCAGCAACTAGAAGACAGACGCGCCGCGCAAAGTTCAAAAACCATCCAAGGATTTACCAATTACGCACAGGTACGCAACATCTTATCTGGAATATGACAGCTCATATTGAGATTCTCCTCGCCACTTTTTGACATGAAGCTCAATTTTCTCGTCACCACGGTGGCTCTGCTCGTTGCCTTTCCACCGCCGTATGAATGTAGAGCCATCGAGAGCAGCTCCAATCAGCCAGCCGCGGACCCCGATGGAGAGCGGCAGTCCCCGCCGGTTTTGGCACGCTTGGGGGAGGAGTACTTCATCCGGCTCGGCAACAGAAACCCGACTTCTCCCCGATCTCCAGCCGACAGCTTCCCCGAGACATCCCAGTATCCAAAAAGAGCGCTGCAGCTCCAGTTAACGCAGCGTCTGTTGGAGGGGAAAGTTGGAAACATCGGCCGCTTGGATGGCAGTTACGCGCTCCGGGCGCTCGACTCAATGGAGAGGGAGCGCAGGTCGGAGGAGCCGCCGATTTCCCTAGATCTGACCTTTCATCTGCTACGAGAAGTACTGGAGATGGCCAGAGCCGAGCAAATGGCCCAGCAAGCTCACAGCAACCGCAAAATGATGGAAATATTCGGGAAGTAACCACGAGCGAACCCATCAGCCAaagatatttttacatttagcaCAAACATGAATACTCTGTACCATAGTGCTGCTTTTCCATCATGATCTATTTATACCGGTGACTTGTTTTATTTGTAGATATCTCAAGGAAGGCGAATAGAGTGCAGTAGGTGTATATGAATCAAAGTGTTCAGAAGCGCAACACTGTCATCACTTTCCATCGATGTTATTGTATAAGTGATCATTCAGAACTGTAGATGAAAAACGTTTGGgtttcctttaaaaaataaaaagacaa
>TCONS_00046432
CATGAAGCTCAATTTTCTCGTCACCACGGTGGCTCTGCTCGTTGCCTTTCCACCGCCGTATGAATGTAGAGCCATCGAGAGCAGCTCCAATCAGCCAGCCGCGGACCCCGATGGAGAGCGGCAGTCCCCGCCGGTTTTGGCACGCTTGGGGGAGGAGTACTTCATCCGGCTCGGCAACAGAAACCCGACTTCTCCCCGATCTCCAGCCGACAGCTTCCCCGAGACATCCCAGTATCCAAAAAGAGCGCTGCAGCTCCAGTTAACGCAGCGTCTGTTGGAGGGGAAAGTTGGAAACATCGGCCGCTTGGATGGCAGTTACGCGCTCCGGGCGCTCGACTCAATGGAGAGGGAGCGCAGGTCGGAGGAGCCGCCGATTTCCCTAGATCTGACCTTTCATCTGCTACGAGAAGTACTGGAGATGGCCAGAGCCGAGCAAATGGCCCAGCAAGCTCACAGCAACCGCAAAATGATGGAAATATTCGGGAAGTAACCACGAGCGAACCCATCAGCCAaagatatttttac
>TCONS_00046433
cccagtattgggttgcagctggaagggcatctgcttcgtaAAACAAATACTGGAATAGGTGGTGGGTTGttccgctgtggcatcccTTCTCCCGCAGATTCTCCTCGCCACTTTTTGACATGAAGCTCAATTTTCTCGTCACCACGGTGGCTCTGCTCGTTGCCTTTCCACCGCCGTATGAATGTAGAGCCATCGAGAGCAGCTCCAATCAGCCAGCCGCGGACCCCGATGGAGAGCGGCAGTCCCCGCCGGTTTTGGCACGCTTGGGGGAGGAGTACTTCATCCGGCTCGGCAACAGAAACCCGACTTCTCCCCGATCTCCAGCCGACAGCTTCCCCGAGACATCCCAGTATCCAAAAAGAGCGCTGCAGCTCCAGTTAACGCAGCGTCTGTTGGAGGGGAAAGTTGGAAACATCGGCC

Function

symbol description
crhb Predicted to enable hormone activity. Acts upstream of or within several processes, including melanosome localization; regulation of hematopoietic stem cell differentiation; and response to immobilization stress. Predicted to be located in extracellular region. Is expressed in several structures, including brain; eye; gill; post-vent region; and testis. Human ortholog(s) of this gene implicated in obesity and panic disorder. Orthologous to human CRH (corticotropin releasing hormone).

GO:

id name namespace
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:0032400 melanosome localization biological_process
GO:0035902 response to immobilization stress biological_process
GO:0033555 multicellular organismal response to stress biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-75 Predicted to enable hormone activity. Acts upstream of or within several processes, including melanosome localization; regulation of hematopoietic stem cell differentiation; and response to immobilization stress. Predicted to be located in extracellular region. Is expressed in several structures, including brain; eye; gill; post-vent region; and testis. Human ortholog(s) of this gene implicated in obesity and panic disorder. Orthologous to human CRH (corticotropin releasing hormone).

Ensembl:

ensembl_id ENSDARG00000027657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046430 False 1079 mRNA 0.45 2 24847683 24849120
TCONS_00046431 False 931 mRNA 0.48 2 24847843 24849091
TCONS_00046432 False 525 mRNA 0.57 1 24848088 24848612
TCONS_00046433 True 420 mRNA 0.57 2 24848311 24881996

Neighbor

gene id symbol gene type direction distance location
XLOC_023471 NA coding downstream 18282 24800776 ~ 24829401 (-)
XLOC_023470 pde7a coding downstream 50228 24733307 ~ 24797455 (-)
XLOC_023469 armc1 coding downstream 123399 24701780 ~ 24724284 (-)
XLOC_023468 NA coding downstream 151926 24553793 ~ 24695757 (-)
XLOC_023466 NA coding downstream 344661 24416324 ~ 24503022 (-)
XLOC_023473 pdk3a coding upstream 62356 24944352 ~ 24959686 (-)
XLOC_023474 slc51a coding upstream 79903 24961899 ~ 24983047 (-)
XLOC_023475 zdhhc20b coding upstream 107149 24989145 ~ 25004611 (-)
XLOC_023476 nup58 coding upstream 126215 25008211 ~ 25030243 (-)
XLOC_023477 phldb2b coding upstream 210320 25092316 ~ 25166720 (-)
XLOC_023665 dre-mir-735 misc upstream 13295965 38177961 ~ 38178027 (-)
XLOC_023467 NA non-coding downstream 355166 24492203 ~ 24492517 (-)
XLOC_023461 NA non-coding downstream 748804 24095316 ~ 24098879 (-)
XLOC_023487 NA non-coding upstream 868640 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1149252 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1350704 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1472700 26354696 ~ 26369185 (-)
XLOC_023503 NA non-coding upstream 1759903 26641899 ~ 26648023 (-)

Expression


Co-expression Network