G437303 (LOC106560250)


Basic Information

Item Value
gene id G437303
gene name LOC106560250
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73431595 ~ 73433683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU495098
TTTATGTACATGAATATTGGCAGGACAACTCTGTACATGTGACAAACACGGTGATACAGTGATAACACAGACCTCCAGcacagaacacatttacagacgGGCTCTTGAGTGTACCCTGGCTGAGATGCACAAGGGAATGTCTCCACAACCACAATTTCCTCATAGATTTTGAATTACTTCCTCATAAATGTAATAGTCATCATTACCAATAAATCAAACAATCAAACCAAAAGAGGCAAAGAAGTATAAAATAATTGAAATCTATCCTAAATGTGAATAAAGCAATGAGAGAACTATACAAGGCCGGTAGCTATTGTATCTCTGCAGGTCAACGGGAATTGAAACTGAAGGAACAAACCATTTTGACAAACACAAGAGTCATGCAGCAACAAAGAAACACACAAGATGAAACAGTCTCTTTTCTGAAGCTCGGAGGTCTCCCTGTTGGCAACGAGATGCTAGGTCCCCAAGCAAAGGTGACAGAGCACCTCGCTATGGATCGCCCAAAAACGTGCCAACAATGAAATGTAAACATAAATATACAGGTTGATATCTCTACAAACAGTTCAGTCTCTGCCACAGGCCCATCAGCTGTGTGAGTAGTCAGTCTGTATTCACTCCTTAGTAGAATATCACTTAGAGTTAAATAAaacttttttaatatatatatttataatagaTTTATTCTATGCAGTCTTTTAGCAGTATTTCCTTGTTTTCACCAGTTTGCTCTGGTATTTGACTGAGTGACCACTGTGGCCCACAACATAAACGTCCAGCAGGTAGGTCTTGCCCGGCTCTAGCCCTGTGATGGTTTCCGTGGTAACGGCCTTCTGCAGGTTAGGGCTGTGGAAGTACTTGCAGAGGACCTTCTCTGACTTCCTGCGCGTCTCGGGCCCGGCACACTGGTTCTGCTCACGGCGCCGCTGCTCCTCGCCGTAGCTCTCGGACACCTCTTTTTTGTAGACACAGTACTTGTTGCGGTCCTGCGTTCCCAGCCAGGCCACAGTGGCAGTGGAGCAGGTACGCAGCTTGTCAAAAGCCTTGATGCGCGTGTCCTCGGGAAGCGAGGGGAAGGGCTGCTTGCTGCTGGGCTTTGTGGTGGCCAGCACCTTCAGGGTGGACGCTCCTTTCCTGCTGCCTCGCAGACGGATCAGGTACTTGGCCTTAGGCTTCCCCCGCAGCTGGAACTGTCGTACCCCTTCCACATTCTGGGAGAGCAGCAACTTGCCGTCACGCCTCACCTGCACCTGGACAGAGTCCAGACAGGTGTGCACAAACAGAGTGACCCTCTGATGAGAGGAGACCGGGGCGAAGCGTAGGAACTTACTGCCCTTCCTCTTGATGAAGACATCAGACACCTtgccatccttcagctccaccgTCTTCTGCCGAGCCTCCTCCTTAGTGCGGGCGAACGTGCCCACGTAGGCGGTGCTGGTGTTGGTGGCAGAGTTCATAGCGAATACGTCAAAGTAGTACTGAGTGTCCGGCTTCAGGTCCGACACGGTGAAGATGTTCTTGTTACCGATGCAGACTTTCTGAATGTCCGAGGCCTTGGACTTGGCTGTGTAGGAGCGGGAGATCTTGTTGCTGGTGAGACCTCGGTCCTTGTTAAAGTCATTGTCTGAGCGGACAAAGCCAAAGTGGGCAAAGTCAAAGGGGCTGAAGTCCCGGCCTGGCTTTGGAACGGCCATGAAGGCATCGTCAGCGCTGATCTTAGCCTCGGCAGCACACAGACTTTTGAAGTTGTGCTCCTTGTTGATGACAACACAGTACTGGACGGGCTGGCCCATCAGAACGCCCGTCGGGGTGGGCTTCCAGGCCAGAGTGACAGTGGTACGGCCCAGGGCAGTGACGTCCACCCGGGGATCGTAGGGCAGCTCGGGGTAGGGCTGGTCAGACTCTGGGGTGGTGGTGGCGTACACCTTGAAGTTGCTGTCCTTCTCTGTGGAGAGCATCTCCAGTTGGTAGAGGCCGGAGGGAGAGCTGGTAGCCATGTAAGACTCCACATCATTCCCCTTGTAGGAGAAGAGCTCTGTGCCCTCATCCACTGTCAcctgctgctgcttctgctggTCCAGGGGCT

Function

NR:

description
protein NDNF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU495098 True 2089 lncRNA 0.51 1 73431595 73433683

Neighbor

gene id symbol gene type direction distance location
LOC110524525 sel1l3 coding upstream 228901 73191132 ~ 73202694 (+)
mdp1 mgdp1 coding upstream 302024 73126632 ~ 73129571 (+)
LOC110524521 LOC106560235 coding upstream 313501 73113320 ~ 73118094 (+)
LOC110522997 dhcr24 coding upstream 328188 73093650 ~ 73103407 (+)
LOC118964641 NA coding upstream 391193 73037279 ~ 73040402 (+)
LOC110524528 cpeb2 coding downstream 52842 73486525 ~ 73513495 (+)
LOC110524529 LOC106560251 coding downstream 81260 73514943 ~ 73524397 (+)
cc2d2a cc2d2a coding downstream 91614 73525297 ~ 73557332 (+)
nek1 NA coding downstream 149699 73583382 ~ 73600500 (+)
sh3rf1 LOC106560245 coding downstream 179674 73613357 ~ 73683714 (+)
G437302 NA non-coding upstream 677 73430624 ~ 73430918 (+)
G437291 NA non-coding upstream 9005 73422162 ~ 73422590 (+)
G436667 NA non-coding upstream 249437 73181834 ~ 73182158 (+)
G436640 LOC100194696 non-coding upstream 250817 73179636 ~ 73180778 (+)
G436556 LOC106560237 non-coding upstream 297921 73132359 ~ 73133674 (+)
G437312 NA non-coding downstream 10463 73444146 ~ 73444404 (+)
G437336 NA non-coding downstream 35094 73468777 ~ 73469172 (+)
G437351 NA non-coding downstream 58001 73491684 ~ 73493525 (+)
G437423 NA non-coding downstream 252793 73686476 ~ 73686746 (+)
G437401 NA non-coding downstream 258173 73691856 ~ 73693829 (+)
G436588 NA other upstream 435860 72995499 ~ 72995735 (+)
G436403 NA other upstream 927160 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1744426 71552653 ~ 71687963 (+)
G434829 NA other upstream 2132695 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 2208017 71218789 ~ 71223578 (+)
G437327 NA other downstream 22618 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1329521 74729349 ~ 74770168 (+)
G438719 NA other downstream 1338326 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 1737621 75161317 ~ 75178287 (+)
G441903 NA other downstream 3834529 77268212 ~ 77268766 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location