XLOC_002358 (smfn)


Basic Information

Item Value
gene id XLOC_002358
gene name smfn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39893439 ~ 39905253 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004474
ACGGATCTATCAGTCTGCCGCTAATCTGCCTGCACTGTTGCGCCGCCCTTGTATTTGCGACACTTGTGTTTGCAAGACGGCAGCGAGCGAACAAGCGGCACACATGTGGAGAGCGGTGCCGTGTGTTTCTGCATTCAGGGCGCTGACTCGAGTCTGTGTGTTTTCACAACGGGTTAAACTTTGCTCACCAGTGTTTCCAGCCCACAACTTCTCTCATTTCAGTGCACGTAGCTCTGTGCCATCCAAGGGTTTGATGTCAAGAAGACGAGCACCCAGCAGGAAGATGTCTCAGATCCAAGCTCAACGGATGGTCTGGGTGGATCTGGAGATGACAGGACTGGATATCGAAAAGGACCAGATTATTGAAATGGCTTGCATTGTTACAGACTCTGACCTGAATGTCATTGCAGAAGGGCCAAATCTGATCATCAACCAACCAGACGATCTACTTGACGGCATGTCAGACTGGTGCAAAGAGCATCATGGGAAATCAGGGTTAACACAGGCAGTCAGGGACAGTCACATCACTCTCCAGCAGGCAGAGTACGAGTTTCTGTCATTCATTCGACAGCACACACCGCCCGGAGTGTGTCCTCTCGCAGGGAACTCTGTTCACGCCGACAAGAAGTTTCTGGATAAATACATGCCTCAGTTCATGCACCACCTGCACTATCGCATCATAGATGTGAGCACCATTAAAGAGCTCTCCAGACGGTGGTATCCAGAGGAGTACAATCTCGCACCGCAAAAAAAATCCTCTCACAGAGCGCTGGACGACATCCAGGAGAGCATTAAAGAACTGCAGTTTTACAGAACGAGTGTTTTCAAAGCCaaggagaagaaaaaaattgttgaaaatgGCAATAAGACGTCCACAAGCTAATCTTGAACCTGATGTGCAGTGCTTTTAGGATCTCGGATTCACACATTTGGATAAAAACTTGTGTGAATGCTTGAGAGTGTGCTAAAGCTGTTGACATCCCTGCTGCTTTGTTCTTTGTTATCCTGGCAAATAGCttcgtttaaaaaaatatatatctaaaaaGTTGACATTTATTGAATTTAACTCAtcattttgaatgatttcctttTATTATCCCTTGTTTTTCACGTTAGTAATGTTTTATTGCTTACTGGATCAAGTCAGTGTGCGGTAATGAAACCGTAGTGTGTTTAAATAGGGTCTTCTGTCGGATACTGCTTTCATTACACCCATTTTTTGGAAATAAAATCTCATTTGTTGCCGTT

Function

symbol description
smfn Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be active in mitochondrion. Orthologous to human REXO2 (RNA exonuclease 2).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1709 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be active in mitochondrion. Orthologous to human REXO2 (RNA exonuclease 2).

Ensembl:

ensembl_id ENSDARG00000009806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004474 True 1248 mRNA 0.45 7 39893439 39905253

Neighbor

gene id symbol gene type direction distance location
XLOC_002355 kirrel3a coding upstream 52020 39476432 ~ 39841419 (+)
XLOC_002357 NA coding upstream 112590 39780561 ~ 39780849 (+)
XLOC_002356 CR854987.1 coding upstream 132560 39760754 ~ 39760879 (+)
XLOC_002354 NA coding upstream 499623 39329302 ~ 39393816 (+)
XLOC_002353 kcnj1b coding upstream 585620 39304422 ~ 39307819 (+)
XLOC_002359 NA coding downstream 3885 39909138 ~ 39917508 (+)
XLOC_002360 BX927333.1 coding downstream 47742 39952995 ~ 40113996 (+)
XLOC_002361 NA coding downstream 217121 40122374 ~ 40281002 (+)
XLOC_002362 git2b coding downstream 378750 40284003 ~ 40317479 (+)
XLOC_002363 gltpb coding downstream 415814 40321067 ~ 40328989 (+)
XLOC_002346 NA non-coding upstream 805586 39084012 ~ 39087853 (+)
XLOC_002344 CABZ01051877.1 non-coding upstream 1132995 38749266 ~ 38760444 (+)
XLOC_002364 NA non-coding downstream 630609 40535862 ~ 40536526 (+)
XLOC_002366 CR396590.2 non-coding downstream 645477 40550730 ~ 40550954 (+)
XLOC_002367 CR396590.5 non-coding downstream 649664 40554917 ~ 40555131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00605566_00612971 REXO2, SMFN, REXO2.L coding CI01000197 null 605566 ~ 613337 (+)