XLOC_002363 (gltpb)


Basic Information

Item Value
gene id XLOC_002363
gene name gltpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40321067 ~ 40328989 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004483
ATGGCTCTTTTGCTGGACCAGCAGTTTGCGCCGCTGTCTGACACCAAAGAAATCGCCACAAAGACATTTCTAGAGTCAGTTTCTCACCTGCCGCCTTTTTTCGATTGCCTTGGTTCCAAGGTCTTTGCTCCAATTAAGTCGGACATTAATGGAAACATCACTAAAATAAAGGCCGTCTATGACTCTGATCCGGTGAAGTACGAGACTCTTCAGCAGATACTGATCATTGAGAAAAGCAGCTATGGCTCAGAGTGGCCTAAAGTTGGAGCCACACTGGCGCTTATGTGGTTAAAGAGAGGCCTGCGCTTCATTCAGATTTTACTGCAGAGTCTTGCCGATGGAGAGAGAGATGAGGACAATCCCAATCTCATTCGCGTCAACATCACCAAAGCTTATGATCAAGCACTGAAGAGATACCACGGCTGGATAGTCCAGAAAGTTTTCAAGGCTGCATTATTTGCTGCACCGTGCCGGTCAGATTTTCTTAAAGCTTTGTCCAAGGATCAAGAAGTTGCAGAGGAGGATTGCTTGGCGAAAGTTCGCCAGTTCTTGATAAACTTCACCGCAACTGTAGATGCTATTTATGAAATGTATTCCACAATGAATGCTGAACTGGACTACTTGGTTTGA
>TCONS_00004484
ATGAagatggctctccaggaacaaggttggccaCCActgctatagaccatttcaatgccGAAAATAAAGGCCGTCTATGACTCTGATCCGGTGAAGTACGAGACTCTTCAGCAGATACTGATCATTGAGAAAAGCAGCTATGGCTCAGAGTGGCCTAAAGTTGGAGCCACACTGGCGCTTATGTGGTTAAAGAGAGGCCTGCGCTTCATTCAGATTTTACTGCAGAGTCTTGCCGATGGAGAGAGAGATGAGGACAATCCCAATCTCATTCGCGTCAACATCACCAAAGCTTATGATCAAGCACTGAAGAGATACCACGGCTGGATAGTCCAGAAAGTTTTCAAGGCTGCATTATTTGCTGCACCGTGCCGGTCAGATTTTCTTAAAGCTTTGTCCAAGGATCAAGAAGTTGCAGAGGAGGATTGCTTGGCGAAAGTTCGCCAGTTCTTGATAAACTTCACCGCAACTGTAGATGCTATTTATGAAATGTATTCCACAATGAATGCTGAACTGGACTACTTGGTTTGAAACTCTAACAGATGTCAGTTTAGATGTAGAGTTATGTTTGTTTgtacagtagctatgtttccagcCGCCtatttttaatgctcatttttgaATGTCGTTTTGACAAAAATGCTTAATTGAAATGccaaaatgtgcaataaaaataaactttatctgatgataaaaa

Function

symbol description
gltpb Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Orthologous to human GLTP (glycolipid transfer protein).

GO:

id name namespace
GO:0120009 intermembrane lipid transfer biological_process
GO:0035627 ceramide transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0120013 lipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-80 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Orthologous to human GLTP (glycolipid transfer protein).

Ensembl:

ensembl_id ENSDARG00000077962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004483 False 630 mRNA 0.45 5 40321067 40328823
TCONS_00004484 True 694 mRNA 0.42 4 40324395 40328989

Neighbor

gene id symbol gene type direction distance location
XLOC_002362 git2b coding upstream 3588 40284003 ~ 40317479 (+)
XLOC_002361 NA coding upstream 40065 40122374 ~ 40281002 (+)
XLOC_002360 BX927333.1 coding upstream 207071 39952995 ~ 40113996 (+)
XLOC_002359 NA coding upstream 403559 39909138 ~ 39917508 (+)
XLOC_002358 smfn coding upstream 415814 39893439 ~ 39905253 (+)
XLOC_002364 NA coding downstream 206873 40535862 ~ 40536526 (+)
XLOC_002365 si:ch211-238p8.10 coding downstream 219627 40548616 ~ 40549641 (+)
XLOC_002366 CR396590.2 coding downstream 221741 40550730 ~ 40550954 (+)
XLOC_002367 CR396590.5 coding downstream 225928 40554917 ~ 40555131 (+)
XLOC_002368 taar18h coding downstream 232703 40561692 ~ 40562717 (+)
XLOC_002357 NA non-coding upstream 540218 39780561 ~ 39780849 (+)
XLOC_002356 CR854987.1 non-coding upstream 560188 39760754 ~ 39760879 (+)
XLOC_002354 NA non-coding upstream 927251 39329302 ~ 39393816 (+)
XLOC_002373 CR396590.8 non-coding downstream 270946 40599935 ~ 40600502 (+)
XLOC_002375 CR396590.7 non-coding downstream 278712 40607701 ~ 40608717 (+)

Expression


Co-expression Network