XLOC_002365 (si:ch211-238p8.10)


Basic Information

Item Value
gene id XLOC_002365
gene name si:ch211-238p8.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40548616 ~ 40549641 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004485
aacaaactcccAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGCCATCAACTCATCATGTGTCAAGGATAGACGCTCCAAACATGAACACAATATAATTTACTTGTTAGTATCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTGGCTGATCTGCTTACTGGGCTTATTGTGATACCAATTGAGGGTATCAAACAAATTGAGACATGTTGGTACTTTGGAGACACCTTCTGTGGACTGTATGTAATCACTGTCAGGCTGCTGCTCTCTGCTtctctgagcaatatagttttaaTTGCTGTTGATCGTTATTTTGCTGTGTGTCACCCTTTATTGTACCCACAAAAAATAACTACAACTAAAACTTTGATAAGCATCTGTGTTTGCTGGTGTTGCTGTTCAGTTTACAGCATTGAATATGTAATTAGTAATGGATATTTTCAAATCTCACACAAAACCCTGTGTTATGGTCAGTGCACTGTAATGTTTAGCCCTGCTTGGAAAATAGCTGATTTAATATGTTCCTTCCTACTTCCTTGTACTGTGATTATAACTGTGTATCTGAGGATATTTTACATTGCACAATTTCAAGTAAAAGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGCAGTAGAAAGTTCAACAAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACATTAGGAATCATTGTGACAGTTTATCTGTTTTGCTGGATTCCTTTCTACATTTGTTCTCTAACAAAAATGACAGCAATAATTTCTACTACAATGACGTTTCTAACATGGACTTTATTTGTTAGCTGTGGTTTAAACCCTTTAGTCtatgctttattttacaaatggttTAAAATATCAGTTAGATGCATAATAACTCTACAAATACTTCAGCCGGCATCCTCTCTAATGGATATTTTT

Function

symbol description
si:ch211-238p8.10 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115284

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004485 True 1026 mRNA 0.37 1 40548616 40549641

Neighbor

gene id symbol gene type direction distance location
XLOC_002364 NA coding upstream 12090 40535862 ~ 40536526 (+)
XLOC_002363 gltpb coding upstream 219627 40321067 ~ 40328989 (+)
XLOC_002362 git2b coding upstream 231137 40284003 ~ 40317479 (+)
XLOC_002361 NA coding upstream 267614 40122374 ~ 40281002 (+)
XLOC_002360 BX927333.1 coding upstream 434620 39952995 ~ 40113996 (+)
XLOC_002366 CR396590.2 coding downstream 1089 40550730 ~ 40550954 (+)
XLOC_002367 CR396590.5 coding downstream 5276 40554917 ~ 40555131 (+)
XLOC_002368 taar18h coding downstream 12051 40561692 ~ 40562717 (+)
XLOC_002369 taar18i coding downstream 19094 40568735 ~ 40569766 (+)
XLOC_002370 si:ch211-238p8.18 coding downstream 28691 40578332 ~ 40579363 (+)
XLOC_002359 NA non-coding upstream 631108 39909138 ~ 39917508 (+)
XLOC_002357 NA non-coding upstream 767767 39780561 ~ 39780849 (+)
XLOC_002356 CR854987.1 non-coding upstream 787737 39760754 ~ 39760879 (+)
XLOC_002373 CR396590.8 non-coding downstream 50294 40599935 ~ 40600502 (+)
XLOC_002375 CR396590.7 non-coding downstream 58060 40607701 ~ 40608717 (+)
XLOC_002376 CR396590.3 non-coding downstream 59820 40609461 ~ 40609953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00072262_00073272 NA coding CI01000158 null 72202 ~ 73528 (+)