XLOC_002375 (CR396590.7)


Basic Information

Item Value
gene id XLOC_002375
gene name CR396590.7
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40607701 ~ 40608717 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004495
aacaaactcctaACAGGGGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTAACATCAACTCATCATGTGTCAAGGAGAATCGATCCAGTTATGAATATTATatcatgtatgtgtttttttcattgctgtcagcatggactgtttctgaacctgctggtgatcatctccatctctcactACAAGAATCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTTGCTGATATGCTAATGGGACTTATTGTGATGCCTGTGGATGCCATTAAGCTGATTGAGACCTGTTGGTACTTTGGAGAAAGTTTGTGTGatgtgtttataataattatgGGTCTACTTCTCTCAACATCTCTtggtaatttagttttaattgctGTTGATCGTTATGTAGCTGTGTGTCACCCTTTAGTGTATCCACTAAAAATAACAATGACTAAAATGTTAATCATTGTCAGTTGCTGCTGGCTTTTTTCTTCAGCttataatattacaattgtaaaaagTACCTCACAGAGAAAAGATGGGTGTTACAGCGAATGTAATGCTACCCTTACATATGAATGGAGAGCTATTGACTTAATATTTTCATTCCTGCTTCCTTGTACAATTATCATAACTTTACATTTGCGAATATTTTATGTTGTACATCAGCAAGTGAAAGTGATCAACTCTCAAATGAAGCGAGGAAAATCTGTCATGGAAAGTTCAGTGAAGAGAAAATCTGAGAGCAAAGCAGCTCTGACATTAGGAATAATTGTAGCTATTCATCTGCTTTGCTGGATCCCATACTATATATTGACTCTAACTGATAACATAGCTATTCCACCCACCGTATTATATTGTCTAATATGGGTCTTATACATTAATTCATGTCTGAATCCTATTCTCTATGCTTTCTTTTACCCCTGGTTtagaaaatcattcaaacacATCTTAACTCTTAAAATATTTCAGCTAGCATCCTCTCATGTCAATCTTTTCACAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004495 True 1017 unprocessed_pseudogene 0.36 1 40607701 40608717

Neighbor

gene id symbol gene type direction distance location
XLOC_002374 si:ch211-238p8.24 coding upstream 595 40606084 ~ 40607106 (+)
XLOC_002373 CR396590.8 coding upstream 7199 40599935 ~ 40600502 (+)
XLOC_002372 taar17a coding upstream 7900 40598791 ~ 40599801 (+)
XLOC_002371 taar18j coding upstream 22746 40583930 ~ 40584955 (+)
XLOC_002370 si:ch211-238p8.18 coding upstream 28338 40578332 ~ 40579363 (+)
XLOC_002376 CR396590.3 coding downstream 744 40609461 ~ 40609953 (+)
XLOC_002377 zgc:172131 coding downstream 14697 40623414 ~ 40628487 (+)
XLOC_002378 taar19n coding downstream 20899 40629616 ~ 40630644 (+)
XLOC_002379 si:ch211-238p8.31 coding downstream 25273 40633990 ~ 40635051 (+)
XLOC_002380 CR396590.1 coding downstream 30059 40638776 ~ 40639804 (+)
XLOC_002367 CR396590.5 non-coding upstream 52570 40554917 ~ 40555131 (+)
XLOC_002366 CR396590.2 non-coding upstream 56747 40550730 ~ 40550954 (+)
XLOC_002364 NA non-coding upstream 71175 40535862 ~ 40536526 (+)
XLOC_002361 NA non-coding upstream 326699 40122374 ~ 40281002 (+)
XLOC_002398 BX001050.2 non-coding downstream 139156 40747873 ~ 40748898 (+)
XLOC_002406 CU571179.1 non-coding downstream 330947 40939664 ~ 40964812 (+)
XLOC_002414 BX005006.1 non-coding downstream 1231202 41839919 ~ 41840033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00157484_00158482 NA coding CI01000158 null 157424 ~ 158612 (+)