XLOC_002374 (si:ch211-238p8.24)


Basic Information

Item Value
gene id XLOC_002374
gene name si:ch211-238p8.24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40606084 ~ 40607106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004494
aacaaactcctaACAGAAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTTAAAGGAGAACGCTCCAGTTATGAATACTACagcatgtatgtgtttttttcattgctgtcagcatggactgtgtttctgaacctcctggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGCTCATTCTCTCTCTGGCTGTAAATGATCTACTTGTTGGACTTATTGTGATGCCAATAGAGGCCATCAAGCTGATTGGGACGTGTTGGTACTTTGGAGATACATTGTGTGATCTGTTTTTGATAATTATGGGTCTGCTCCTCTCTACATCTCTTTGCAATTTGGTTTTAATTGCTGTTGATCGTTATGTAGCTGTGTGTCACCCTTTACTGTACACACAGAAAATAACAATGACTAGAACcttatttattgtttgtatcTGCTGGGTTTTTACTTCATCGTATAATATTGCTATTGTAAGAAGTACCTCACACAGAACAAGCGGGTGTTATGGTGAATGTAATGTTAAGCTATCTCTTGAATGGAGAGTAACAGATTTAATATTTTCCTTCCTGCTTCCTTGTACAGTGATCATAACTTTACATTTGAGGATATTTTATGCTGTACATCAGCAAGTGAAAGTGATCAACTCTCAAATGAAGAGAGGTAAAGTTGCAATAGGGGGATCAGTGAAGAAAAAAACTGAGAGCAAAGCAGCTCTGTCATTAGGAATAATTGTCGCAATTCATCTGCTTTGCTGGATTCCATACTTTATATTGACTCTAACTGATAACATGGCAATTCCACCCACcgttttatattgtttaatatgGGTCTTGTATATTAATTCATGTCTGGATCCTCTTTTCTATGCTTTCTTTTACACCTGGTTTAGAAAATCAATCAAACACATCTTAACTCTTAAAATATTTCAGCTAGCATCCTCTCAtatcaatatttttacaaataat

Function

symbol description
si:ch211-238p8.24 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-22 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000086732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004494 True 1023 mRNA 0.37 1 40606084 40607106

Neighbor

gene id symbol gene type direction distance location
XLOC_002373 CR396590.8 coding upstream 5582 40599935 ~ 40600502 (+)
XLOC_002372 taar17a coding upstream 6283 40598791 ~ 40599801 (+)
XLOC_002371 taar18j coding upstream 21129 40583930 ~ 40584955 (+)
XLOC_002370 si:ch211-238p8.18 coding upstream 26721 40578332 ~ 40579363 (+)
XLOC_002369 taar18i coding upstream 36318 40568735 ~ 40569766 (+)
XLOC_002375 CR396590.7 coding downstream 595 40607701 ~ 40608717 (+)
XLOC_002376 CR396590.3 coding downstream 2355 40609461 ~ 40609953 (+)
XLOC_002377 zgc:172131 coding downstream 16308 40623414 ~ 40628487 (+)
XLOC_002378 taar19n coding downstream 22510 40629616 ~ 40630644 (+)
XLOC_002379 si:ch211-238p8.31 coding downstream 26884 40633990 ~ 40635051 (+)
XLOC_002367 CR396590.5 non-coding upstream 50953 40554917 ~ 40555131 (+)
XLOC_002366 CR396590.2 non-coding upstream 55130 40550730 ~ 40550954 (+)
XLOC_002364 NA non-coding upstream 69558 40535862 ~ 40536526 (+)
XLOC_002361 NA non-coding upstream 325082 40122374 ~ 40281002 (+)
XLOC_002380 CR396590.1 non-coding downstream 31670 40638776 ~ 40639804 (+)
XLOC_002398 BX001050.2 non-coding downstream 140767 40747873 ~ 40748898 (+)
XLOC_002406 CU571179.1 non-coding downstream 332558 40939664 ~ 40964812 (+)

Expression


Co-expression Network