XLOC_002377 (zgc:172131)


Basic Information

Item Value
gene id XLOC_002377
gene name zgc:172131
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40623414 ~ 40628487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004497
TAACCAACAGTGCATTCATAAGAGGTAATCGTGATCCACCCTTTAAAAAAACACCTCACATGGTTTTCACTTTCAGTAACTGCAGAGTCCCACTAGAAATTGTCTATTTGGTTTGTTTCGTCTGTAGTGAATTGATCTGAAACTTCAAATGATTTCAATATGTCAGAAGGACTTCACAACATTGAGGAGGACTTTAATGGACCCCtaacatttttttctgatagGGGCAAACAGCTGGTGTAAGTGTATGAtgggaaataaaattattgggtTTGAACATTTCCTACCAGAGTATTCTACATATGCTGATGAGGTATCATTGCAAATAAATGGCCAATGGATTACTGTTATGCAAGAGCCTCAGACTATAATGCAAAGGTTTAAAGAGACATCATCTAGATGTGCTTGGATGATTTTATTTGTCCTGCAGTGTGACCATGTTTCTCAGAAGGATGTGGACGCATTTGCTCATTTCCAGCAGAGGTTTGgaaaagaaatggaggaaaatacTGTTGTAGTTCTGTTCAATATTAAAGATAACACATCAGCAGGGGCAAATAATGAGAACCTAGAAATGACACTTAGTCGGTATGGAAGGAAGTTGTGGATTTTTAACAAAAATCTGGAGCAAAGTGAAGTGATTAGACAACTAATTGCACATAAAAAATGTGCACCTGTGTCAAACAATGCTGATAGGTAAGACAAAAAATCTGAGTTTATTGCTTCAATGCATCCATCAATGCATCCATTAATTTATAGAGTTTCTCCCTAAATGCAGATCATCACATCAGACAACATCTGTGGAAAGAGAGATTCCTAAACCACGAACGGCAATTGCACGTGATCAGATGTCAGgaGGTAAACAAGCTGCTGTCAAGAAGAAAAACACTTTGACTATTGTCCTGCTGGGTCAGACTGGAAGTGGAAAAAGCGCTACTGGAAACACCATCCTGAGAAAACAGCACTTTGAATCACGTGCCAGTTCAGTGCCAGTAACAAAGGTGTGCCAGTTGGGAGAGGAATCAGTATGTGGAATCAGGATCAAAGTAATTGACACCCCTGATTTCTTCGACGAAGACttaaaaaaccaaacagaacaGATAAGAAAGTACAAAGAGCTCACTCAGCAAAGACCTGATGTATATTTGCTGGTGCTGGAGCTCGGACGTTATACAGACGGAGAGAGGGTGatagttcagaacatacaaagaTTGTTTGGTGCTGAACTGGTAAAAGAAACCATCATTCTGTTCACCAGCAAGGAGAAATTAAGAAGAAAATCTCTATCAGATTACATTAAAAACACTGACACGCAACTGCAAGAGTTGGTCAGATCCTGTGGATCGCGGTGTCATGCATTTAACAACAACGATGACAATCTTTCTCAGGTGGAGAGACTGTTAGAAATGATTCTGGAAATGAAGAGGAAAAATGGATGTACTGACATTCCTGAGGACTACTCATTTAATAAGAAATCCGAGAAAAAAGAGTGCAGAATCCAATAGAGTCTGACAAGGGATTCTTTCCTTAGACAGTTCACCCCAATGAACATTTTCTCAGCATTTACTCACAAAAGggcttctaaacttttatgaagtaCTTATTTAGAAAGCACAACAACATGGTCTGAGAAATGTTGAAAATCAAAAGTTATTCTCATCCATAGTAGGAATAAAAATACTTATAGCATTGGTAGTTCACACTAGATTTGTAGTTCGGTTCAGTTGCAGAAATGTAGTTCTCTGAACCAACTAAACCAAACTACAAATCCCAGAATTCATTGCTCCAATCACTCCTTCCACAGATGAAAGTCATtctgacactgatatacacacacacagctgaaactcatCTTTATTAATTACCTGGACTTTGTATACACCACACTTTCACACaaactttgctgagtcttgttatcctATAGCATCACGAAGCATTAATCCTGTCTAGTCTTTTGTGTTTTGATTCTTGCCTTGTTTTCCTGTTATTGATTCTTTGCCGCCTGGACTATCCATTCGCCTGTATTTTTGACTACAATCTTGGATTAGCTTCATGCTCCTGTTTGCTACCTGACAGTTGCGTGCCTaactactgttataaactagcagTATAAACTGTTATAAACTAATAAACTGCGTGTGGATCTTCAACTCCATTATCCAGCACTCCTATGTTACAATACCATTATAGCCTATAGCTACCAGTTTTCATATCCCTTattcccaatgttgacaggtatggttcaacagaagaaagaaactcaagaaaAGGAGGGTTTCCACTGAACCATTCCtttaaatagttaattttttgtgtttttaattatatttagattTAAGGTATTAATTTAGCTGTGATCAAATCACTTTTAAATTGCATGTCAACACTGTAAAGCAAATTAAAGATGTGCATTTTCTCTAAAAAGACACCTTTTCAGTTGTTATCGTgctttacactctcagaaataaaggtacaagagctgtcactggggcagtaccttttcaaaaggtacatatttgtacttgaagagtccatattggtacctcaaaggtac
>TCONS_00004498
TGCATCCATTAATTTATAGAGTTTCTCCCTAAATGCAGATCATCACATCAGACAACATCTGTGGAAAGAGAGATTCCTAAACCACGAACGGCAATTGCACGTGATCAGATGTCAGgaGGTAAACAAGCTGCTGTCAAGAAGAAAAACACTTTGACTATTGTCCTGCTGGGTCAGACTGGAAGTGGAAAAAGCGCTACTGGAAACACCATCCTGAGAAAACAGCACTTTGAATCACGTGCCAGTTCAGTGCCAGTAACAAAGGTGTGCCAGTTGGGAGAGGAATCAGTATGTGGAATCAGGATCAAAGTAATTGACACCCCTGATTTCTTCGACGAAGACttaaaaaaccaaacagaacaGATAAGAAAGTACAAAGAGCTCACTCAGCAAAGACCTGATGTATATTTGCTGGTGCTGGAGCTCGGACGTTATACAGACGGAGAGAGGGTGatagttcagaacatacaaagaTTGTTTGGTGCTGAACTGGTAAAAGAAACCATCATTCTGTTCACCAGCAAGGAGAAATTAAGAAGAAAATCTCTATCAGATTACATTAAAAACACTGACACGCAACTGCAAGAGTTGGTCAGATCCTGTGGATCGCGGTGTCATGCATTTAACAACAACGATGACAATCTTTCTCAGGTGGAGAGACTGTTAGAAATGATTCTGGAAATGAAGAGGAAAAATGGATGTACTGACATTCCTGAGGACTACTCATTTAATAAGAAATCCGAGAAAAAAGAGTGCAGAATCCAATAGAGTCTGACAAGGGATTCTTTCCTTAGACAGTTCACCCCAATGAACATTTTCTCAGCATTTACTCACAAAAGggcttctaaacttttatgaagtaCTTATTTAGAAAGCACAACAACATGGTCTGAGAAATGTTGAAAATCAAAAGTTATTCTCATCCATAGTAGGAATAAAAATACTTATAGCATTGGTAGTTCACACTAGATTTGTAGTTCGGTTCAGTTGCAGAAATGTAGTTCTCTGAACCAACTAAACCAAACTACAAATCCCAGAATTCATTGCTCCAATCACTCCTTCCACAGATGAAAGTCATtctgacactgatatacacacacacagctgaaactcatCTTTATTAATTACCTGGACTTTGTATACACCACACTTTCACACaaactttgctgagtcttgttatcctATAGCATCACGAAGCATTAATCCTGTCTAGTCTTTTGTGTTTTGATTCTTGCCTTGTTTTCCTGTTATTGATTCTTTGCCGCCTGGACTATCCATTCGCCTGTATTTTTGACTACAATCTTGGATTAGCTTCATGCTCCTGTTTGCTACCTGACAGTTGCGTGCCTaactactgttataaactagcagTATAAACTGTTATAAACTAATAAACTGCGTGTGGATCTTCAACTCCA

Function

symbol description
zgc:172131 Predicted to enable GTP binding activity. Orthologous to several human genes including GIMAP1 (GTPase, IMAP family member 1) and GIMAP6 (GTPase, IMAP family member 6).

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-47 Predicted to enable GTP binding activity. Orthologous to several human genes including GIMAP1 (GTPase, IMAP family member 1) and GIMAP6 (GTPase, IMAP family member 6).

Ensembl:

ensembl_id ENSDARG00000076269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004497 False 2554 mRNA 0.38 3 40623414 40628487
TCONS_00004498 True 1415 mRNA 0.39 2 40624702 40628088

Neighbor

gene id symbol gene type direction distance location
XLOC_002376 CR396590.3 coding upstream 13461 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 coding upstream 14697 40607701 ~ 40608717 (+)
XLOC_002374 si:ch211-238p8.24 coding upstream 16308 40606084 ~ 40607106 (+)
XLOC_002373 CR396590.8 coding upstream 22912 40599935 ~ 40600502 (+)
XLOC_002372 taar17a coding upstream 23613 40598791 ~ 40599801 (+)
XLOC_002378 taar19n coding downstream 1129 40629616 ~ 40630644 (+)
XLOC_002379 si:ch211-238p8.31 coding downstream 5503 40633990 ~ 40635051 (+)
XLOC_002380 CR396590.1 coding downstream 10289 40638776 ~ 40639804 (+)
XLOC_002381 taar19t coding downstream 14030 40642517 ~ 40643602 (+)
XLOC_002382 taar19s coding downstream 18277 40646764 ~ 40647825 (+)
XLOC_002367 CR396590.5 non-coding upstream 68283 40554917 ~ 40555131 (+)
XLOC_002366 CR396590.2 non-coding upstream 72460 40550730 ~ 40550954 (+)
XLOC_002398 BX001050.2 non-coding downstream 119386 40747873 ~ 40748898 (+)
XLOC_002406 CU571179.1 non-coding downstream 311177 40939664 ~ 40964812 (+)
XLOC_002414 BX005006.1 non-coding downstream 1211432 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1354510 41982997 ~ 41986283 (+)

Expression


Co-expression Network