XLOC_002380 (CR396590.1)


Basic Information

Item Value
gene id XLOC_002380
gene name CR396590.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40638776 ~ 40639804 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004501
aacaaactcctaACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTAACATCAACTCATCATGTGTCAAAGGAAAACGCTCCATTCAGGAATACAATATCatgtatgtgtttatttcactgctgtcagcatggactgtgtttctgaacctgctggtgatcatctccatctctcacttcTAGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTTATTGGCCTTATTGTGATGCCTGTAGAGGCCATCAGGCTGATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTGTTCTGTATTTAATTTCAATTGTGCTTATTTTCTCTGCATCTCTcagttatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTATACCCACAGAAAATAACCATCACTAACATTTTAATGAGCATCTGTCTGAGTTGGGTTTGCTACTCAGCTTATAACATCGCCTATGTAATTAATAATGGATATTTAAACTCTTCACGCAGAACAGATGTGTGTTATGGACAGTGTTTAATCATGATGAGTTTTAGCTGGACAGTCATTGATTTgtccatttgttttatttttccctgtCTCATAATGATCACTTTATATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGAAACGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCTGTTTATCTGCTTTGCTatatcccatactatatctgtactttactTGTAAGCTCCTCCACAACTATAACTGTTTTGATGTGGAATGTGCATGCTAATTCAGGTATGAATCCTCTGGTTTATGCTATATTTTACCCCTGGTTTAAAaagacagctaaactcatcttaactctgaaaatatttcagccGGCATCCTCActgataaatatatttacagaaaAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004501 True 1029 unprocessed_pseudogene 0.38 1 40638776 40639804

Neighbor

gene id symbol gene type direction distance location
XLOC_002379 si:ch211-238p8.31 coding upstream 3725 40633990 ~ 40635051 (+)
XLOC_002378 taar19n coding upstream 8132 40629616 ~ 40630644 (+)
XLOC_002377 zgc:172131 coding upstream 10289 40623414 ~ 40628487 (+)
XLOC_002376 CR396590.3 coding upstream 28823 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 coding upstream 30059 40607701 ~ 40608717 (+)
XLOC_002381 taar19t coding downstream 2713 40642517 ~ 40643602 (+)
XLOC_002382 taar19s coding downstream 6960 40646764 ~ 40647825 (+)
XLOC_002383 si:ch211-238p8.35 coding downstream 12595 40652399 ~ 40653442 (+)
XLOC_002384 si:ch211-238p8.35 coding downstream 18145 40657949 ~ 40658992 (+)
XLOC_002385 taar19l coding downstream 20968 40660772 ~ 40661767 (+)
XLOC_002373 CR396590.8 non-coding upstream 38274 40599935 ~ 40600502 (+)
XLOC_002367 CR396590.5 non-coding upstream 83645 40554917 ~ 40555131 (+)
XLOC_002366 CR396590.2 non-coding upstream 87822 40550730 ~ 40550954 (+)
XLOC_002398 BX001050.2 non-coding downstream 108069 40747873 ~ 40748898 (+)
XLOC_002406 CU571179.1 non-coding downstream 299860 40939664 ~ 40964812 (+)
XLOC_002414 BX005006.1 non-coding downstream 1200115 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1343193 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1830812 42470616 ~ 42477259 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00854502_00855500 NA coding CI01000197 null 854491 ~ 855516 (-)