XLOC_002383 (si:ch211-238p8.35)


Basic Information

Item Value
gene id XLOC_002383
gene name si:ch211-238p8.35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40652399 ~ 40653442 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004504
gagcagaacaaactcctaACAGGAGGAGACTCACTCATGGCCTACGAGACAGAGCATCAGGAGACTCAATACTGCTTTCCTAACATCAACTCATCATGTGTCAAAGGGAGACGCTATAGACATGAATATATCATCATGTATGTGTTCTTTTCACTGCTGTCAGCATGGACTGTGTTTCTTAACCTGCtggtgatcatctccatctcACACTTCAAGAAGCTTCACACTCCAACCAACATGATTATTCTCTTTCTGGCTGTAAATGATCTGCTTATTGGACTTATTGTGTTGCCTGTGGAGGCCATCAGGCTGATTGAGAGGTGTTGGTACTTTGGAGAAACTTTTTGTTTtctgtatttaatattaattgtgCTTATTTTCTCTGCATCTCTcagttatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTGTACCCACAGAAAATAACCATCACTAACATGTTAAAGAGCATCTGTCTGAGTTGGGTTTGCTACTCAGCTTATAACATCGCCTTTGTAATTAATAATAGAAACTTAAACTCTTCACAAAAAACAGATGTGTGTTATGGACAGTGTTTAATCATGATGAGTTTTAGCTGGACAATCATTGATTTgtccatttgttttatttttccctgtCTCATAATGATCACTTTATATTTGAGGATTTTCTATGTTGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGCTAAATGTGAAACGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCTGTTTATCTGCTTTGCTatatcccatactatatctgtactttactTGTAAGCTCCTCCACAactataaatgttttaatgtggAATGTACATGCTAATTCAGGTCTGAATCCTCTGGTTTATGCTATATTTTACCCCTGGTTTAAAaagacagctaaactcatcttgactctgaaaatatttcagccGGCGTCCTCTctgataaatatatttacagaaaATGAATTGTAA

Function

symbol description
si:ch211-238p8.35 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-36 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000114771

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004504 True 1044 mRNA 0.37 1 40652399 40653442

Neighbor

gene id symbol gene type direction distance location
XLOC_002382 taar19s coding upstream 4574 40646764 ~ 40647825 (+)
XLOC_002381 taar19t coding upstream 8797 40642517 ~ 40643602 (+)
XLOC_002380 CR396590.1 coding upstream 12595 40638776 ~ 40639804 (+)
XLOC_002379 si:ch211-238p8.31 coding upstream 17348 40633990 ~ 40635051 (+)
XLOC_002378 taar19n coding upstream 21755 40629616 ~ 40630644 (+)
XLOC_002384 si:ch211-238p8.35 coding downstream 4507 40657949 ~ 40658992 (+)
XLOC_002385 taar19l coding downstream 7330 40660772 ~ 40661767 (+)
XLOC_002386 taar19u coding downstream 11740 40665182 ~ 40666204 (+)
XLOC_002387 taar19p coding downstream 17405 40670847 ~ 40672605 (+)
XLOC_002388 taar19o coding downstream 24034 40677476 ~ 40678507 (+)
XLOC_002376 CR396590.3 non-coding upstream 42446 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 43682 40607701 ~ 40608717 (+)
XLOC_002373 CR396590.8 non-coding upstream 51897 40599935 ~ 40600502 (+)
XLOC_002367 CR396590.5 non-coding upstream 97268 40554917 ~ 40555131 (+)
XLOC_002398 BX001050.2 non-coding downstream 94431 40747873 ~ 40748898 (+)
XLOC_002406 CU571179.1 non-coding downstream 286222 40939664 ~ 40964812 (+)
XLOC_002414 BX005006.1 non-coding downstream 1186477 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1329555 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1817174 42470616 ~ 42477259 (+)

Expression


Co-expression Network