XLOC_002406 (CU571179.1)


Basic Information

Item Value
gene id XLOC_002406
gene name CU571179.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40939664 ~ 40964812 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004529
GGCAATCTGAAACTCTGCAGGCGAACGGCTGTTTTTGTCTCTGTTAAAAGCAAGTTACAAGAAAGTTTTTACAAAGTTTGCAGTAATTATGAAGTAGTCTACACAAATACTGATGATGACAATGATGAAGCACTGACCTGAGATGAGGCTGTCAATCAGTGTGGTGGGCACGCAGAAAATGCCCACCAGCAGGTCGCTGACGGCCAGGTTGAGGATGAAGAGATTAGTGACGGAGCGCATGTTTCTGTTCCTGATGACCACCAGACAGACCAGCCCGTTGCCCACCACACACAGCAGCAACACCAGCAGATACGAGAGGATGTAGCTGACCGCCATCCCCGCCGAGTGGATGTAATACGGCAACAGTGTGCAGTTTTGCCAGCTCAGGTTGGCAGCAGAGTGGTTGAGGGTCATTGTGTCCATCTcggatcttgaaaataaaaatgatttgaacAAGCATTGCTCAATGGATAGATATGAAAATTCAAAATCTCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004529 True 496 lncRNA 0.47 2 40939664 40964812

Neighbor

gene id symbol gene type direction distance location
XLOC_002405 trim69 coding upstream 87987 40836378 ~ 40851677 (+)
XLOC_002404 si:ch211-139n6.3 coding upstream 139807 40792078 ~ 40799857 (+)
XLOC_002403 taar19c coding upstream 157551 40781052 ~ 40782113 (+)
XLOC_002402 taar19b coding upstream 164421 40774215 ~ 40775243 (+)
XLOC_002401 taar19d coding upstream 170400 40768203 ~ 40769264 (+)
XLOC_002407 antxr1b coding downstream 8712 40973524 ~ 41046775 (+)
XLOC_002408 anxa4 coding downstream 194429 41159241 ~ 41192881 (+)
XLOC_002409 adrb3b coding downstream 234848 41199660 ~ 41214668 (+)
XLOC_002410 prlhr2b coding downstream 287713 41252525 ~ 41260567 (+)
XLOC_002411 CABZ01049847.1 coding downstream 585007 41549819 ~ 41609165 (+)
XLOC_002398 BX001050.2 non-coding upstream 190766 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 299860 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 329711 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 330947 40607701 ~ 40608717 (+)
XLOC_002373 CR396590.8 non-coding upstream 339162 40599935 ~ 40600502 (+)
XLOC_002414 BX005006.1 non-coding downstream 875107 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1018185 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1505804 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 1756029 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 1765134 42729946 ~ 42731994 (+)

Expression


Co-expression Network