XLOC_002429


Basic Information

Item Value
gene id XLOC_002429
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42720841 ~ 42723221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005941
ctacaacagattatgttgtatagttgctatggtattcCAAAAGCTGCAGCAATATAAACTAATTAATCTGTTGCGTTGATTCTGATCACCACACCAGATTAATTTAAGTGCTTCACTACAGTATGATCTAAAACACTAGAGGATTTACTacgaattactatagtatttttgatGTGGGTGATGTGATGACAGCAGGTCTGAGTGACTGTAGAGTTGAGattatatatatctgtatatactgtactgtactgtctcaatgtgatttCCTCTAGATTCTGCTGGCGGAGTCTCCTCATGTTTCAGTTATGAATCGAGACGCTAATGAAGGGATTCTTCATGCTTGTTTGCACAATGAAATGaaaagttattagtaactgaGTTTTTCTCTCGCATGTCAGCCTTTCTTGCAGTTCCAAGTTTGTAACTCAGAATCGTAATAAATATGATCGCCTATATCAATTCAAGATTTTCTGTATAAATTGGACTAAAATGATCGATGATTGATCAGAAGTCCCAGCCGGACTCTTCATCAGCCAGAGGATCATCAGTGTCTTCTGGAAAACAGTCAAAGTTACTGAAACCCTGCAAAAGAATTTCAATTACAAAACATCTGTCAAATGATTTATTACAAACACGATTCAGGTAGACATAAACAGCCACAGAAAGACTTTTTACAATGTCTTTtacagcttttacaatgtagattgtgtcaaaacagcctAACAGAAGATTATAGTagattgaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005941 True 747 lncRNA 0.35 2 42720841 42723221

Neighbor

gene id symbol gene type direction distance location
XLOC_002428 rhobtb2b coding upstream 4102 42678520 ~ 42716739 (+)
XLOC_002427 fgfr1b coding upstream 59396 42589391 ~ 42661445 (+)
XLOC_002426 kctd9b coding upstream 165019 42542517 ~ 42555822 (+)
XLOC_002425 actr1 coding upstream 180002 42521943 ~ 42540839 (+)
XLOC_002424 NA coding upstream 243582 42470616 ~ 42477259 (+)
XLOC_002430 NA coding downstream 6725 42729946 ~ 42731994 (+)
XLOC_002431 CABZ01063556.1 coding downstream 9989 42733210 ~ 42740662 (+)
XLOC_002432 NA coding downstream 17864 42741085 ~ 42745580 (+)
XLOC_002433 NA coding downstream 96505 42819726 ~ 42820906 (+)
XLOC_002434 zcchc9 coding downstream 174882 42898103 ~ 42903716 (+)
XLOC_002417 NA non-coding upstream 734558 41982997 ~ 41986283 (+)
XLOC_002414 BX005006.1 non-coding upstream 880808 41839919 ~ 41840033 (+)
XLOC_002406 CU571179.1 non-coding upstream 1756029 40939664 ~ 40964812 (+)
XLOC_002398 BX001050.2 non-coding upstream 1971943 40747873 ~ 40748898 (+)
XLOC_002439 NA non-coding downstream 795373 43518594 ~ 43525213 (+)
XLOC_002441 NA non-coding downstream 1105106 43828327 ~ 43938288 (+)

Expression


Co-expression Network