XLOC_002439


Basic Information

Item Value
gene id XLOC_002439
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43518594 ~ 43525213 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005944
cccatacagttgaatagagcgcttggacccggaagccgcttcgcgtgacgtcacacttaacaagcggattctgtttagaaatgtgttgacaaaatctgctctctgttaaacagaaattgggaaaataaacaggggggcctggaaattctgactttaactgtacatatatttcaataagtAAACGcaacgatgggctaaaaatctgtgcaAATCTGTTTATTTCTGCATGTCGGCCTACAAATGagctaataaaattattatgttaaaaaaatcagCACATCGcaaatattcaaaaataatttGGCCTTCAATTCTCTCTctgtacagttgaaggcagaattattcgcccccctttgaattttatttctatttttaaatatttcccaaatgatgtttaacagagcaagaaaactttcacagtatgtctgataatattttttctttttatttgttttatttcagctggaataaaagcagttttaaattttttaaatccattttaaaggtcaatattattagtcccttttagcagattttttttctcgatagtctacagaacaaaccatcgttatacaataacttgtcgaaccttaacctgcctagttaccctaattaacctagtgaagcctttaaatgtcactgtaagctgaataagtgtcttgaagaatatctagtcaaatattatttactgtcatcatgacaaagagaaaataaattgtaattagagatgagttattaaaactattatgactacaaatgtgttgaaaattctgcagaaattggggaaaaaataggcaggggtctaataattctgacgtcaactgtatataaatatgcataaatgcAAGCTTAAAATATTGTCAGCACACAAATCGAGAATTTAATACGTTTCTTCTCTTCTCTCTATTCCTCTTCTTTATTTTCCACAGCCAAAGACAcctgttttggttttttttgttCTCTACTCTGCTTCATTCAAAGCATTTAGTCTCCTGCTTAACCCAGCACTTTAAGCACACAGTGAGGGGGATGATTGCATCACAAAGGAAAGCACCAAGTCCATACCCCTATTTTGGCTTTGCAATTTGCATGCATTTGCATGATTTTATTATGCACATGCCTTTTGTTCCCTGGGTGGGAaccatggagaaaaaaaaaaaaagacggaGCCCGTGCAAACCAAACCCACTTCAACAAATATACAGTCAGACGACAGATTTTCTAATGAAAGCTGAGCTGCTAATAACTGCACAGCGCTGCATATTCAACACCAAATGAGCTactgcaacaaaacaaatgagaatgcattattttctaattgaTAAATGCATGAATTCTtgtattattatcactatttctacacacacacacacacacacacacagatgctttGGGCTTCACACAGTCGCTGCTTCattattataatcataatatCAGATCATTATTAGCGTCCGGCATCGCTGAGAACTTCCTAATGGAACAGTCCAATTCCACTGACGTGATTTGAAGAAATAGGTCAGGGGTTTAATGTTGCCTTCGGCCTGGTTTTCTAaagcacgctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacaccgcgagTCTGAACATTTCCTCCGAATTAATTCTTGTCATGcaacattttctctttgtatCAGAGACAAAACGAGAAGCTCTCATATGCATTGTTAATTCTTTCATAAACATTTGCTCCAGCGCTGTTTAATAGAGAGAGgatttattttcaacacatttttagccgtgatatttctaaaaactgatttattttgtaacGATGacagcagtggcgcagtaggtagtgctgtcgcctcaccgcaagaaggtcgctggttcgagcttcggctgggtcagttggcgtttctgtgtggagtttgcatcttctcccagtatttgcatgggtttcctctgggtgctccggtttcccccagtccaaacacatgcggtacaggggaattgatgaactaaattggccgtagtgtatgagtgtgtgtggttgagtgtgtaagggcatccgctgcataaaacatatgctggataagttggtggttcattccgctgtggcgacccctgatgaataaagggactaagccaaaaagaaaatgaatgtatgtttgTACGTctttgtggttgtgtgtgtgtgtgtgtgttcacgtcTCTTTTTCTGCCCTCTGGCTCTCCACTCACCTCATGTTGCATCAGCCTGATGAGCAGTGCTGCCTTCACATCTTCCTGCAGGccactggacacacacacacacacacacacacacacacacacacacacacacacacacacacggagagaCACACATACCGTACATTAAACACACAATAAAGGCTCACTGTTGTGTCTACTATTCTGTTGGATTCACCAAATAcgagctacactgcaaaaaagagagttttagtcttgtttctagtccaaatatctaaagattcttaAGTCAAGAAGCATTATCTAGCAAGCAAACCATATTGTGCTGTTTTAAGAAGTAAtgagccaaaattaagtgagtttctccttgaaacaagcacaataatctgTAAGGGAGCAGGTTAAAATAACCTtttcaccccattggcagattattgtgcttgtCATAAAGAAAATAAcccaacatttattttaaagagtaaATAATGACGAGCTCAGCCTCTCAGGAAATGTGTGCATCTGTCGGACATTTATattcaaacatttaaaatttcattCAATGCGTTTGGTCTCAGTTCAGATGCTGAGAACTGACTCACTCAGAACATTCTGCTTTATCAACCACTCAttcaaccactcagaacattcTGCTTTATCTACAACACACACTCTAAAACATGCCGGGCTGTTGTAACCCAATATATGGGTCAAAAATAGACAAAACCGACCATGTGGTTTAAAAGTGAACTTAAAAATTAaccatttattgatttattttccttcggcttagtcacttatttaacatgggtcgcaacagcggaatgaaccgccaactattacagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatacacacacgcacacacacacacacacacacacacacacatatacacacacaatatggccaatgtagttcatcaattcccctatagcgcatgtgtttggactgtgggggaaaacggagcacctggaagaaactcacgccaacatgtggagaacatgcaaactccacacagaaatgacaactgacccagccgggacttgaaccagcgaccttcttgctgtgaggcaacagtgctaaccactgagccaccgtgccacccaaaaTTAACaattatacttaaaaataaaacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtcaatttttgacccagcattgggttaaaTCAACCCAGCATTTGATTCAGTATATAATGATGAGCTCAGCTTCTCAGTTAATGTGTGCATCTGTTTATCAAACTGAATTCAATTCTGATGGTCTCAGTTCAGGCATTGAGCTTTGAACCTATAACCTACAGAACATTCTGCTTCATCTACAccacacactctaaaaaaatgctgggttgatgGAACCCACGTTGAGtcaaaaatacacaaacccaaccatgtggctaaaaagttaacttaaaaatttaatagaaaaaaaaaacattctctcaaaaaaaaaaaaaacatgctgtttttGACCCAGAATTGGGTTAAaccaacccagcatttttttttttaaaagagtacatctgtcagatgcattttgatacAAACATCAAAAGTTTAATTCAATGCGTTTGGTCTCAGTTCAGGCCATGAGTTTGGAGCATTAACCTACAGAACATTCTGCTTTATCTACAACACACACTCTAAAACATGCCGGGCTGTTGTACCCCATATTTGGGTCAGAAATTGACTGAACCAACCATGTGGTTAAAAAGTgtacttacatttttaatttacatcccactcttttttttaatgatggattATTTGTACACTTTTAACCCAATGTTAGTAAAGAGAATATAATGATGGGCTCTAAAATTTTATTGCCATTACAGTAAAgctgggttgttgtttttttaattaattaatttatttttttgacccAGCATTAGTTTGAAACATCActgcatttctttttcttttttttttttttttgtcatggaatTTTATTCTTGCAAATAGCATTTAACATATTATAACAACCCACAAAACAATacccaaataaaacaatcaacatctgcaaatgaataaataaataaataaaataaacaaaataataataaataaaataaatacaaatacaaagaaaaaaaattataacaaaacatGTACAaacgtacacacatacacatgtaccTTCACTCAATACACATCTAAGGTTTTTGCGTGACTATAGAATACAATAAATTGttgccatttttcaaaataattttctcCTCTACCTctgatattgtatttaattttctaaagttttaaaaagaagaccAAATCTTTGAGCCATAATGAAATAGAGGGGGGTTGTGAAGAGGTCCAAGACAACGGTACTCTGCGCCTAGCAAGAAGAGAGGCAAAAGCCACAATGTCAGCGTGTCTCCGGTCTAAAGGTCGACACTGAGAGGGAACACCAAAGATTAAAGGGCAAACAGTTAACTTGACCCACAGAATATCAGAAACAATTTTCAAGAAAGCAATCCAATAATTTTGCAACTTGGgacaaaatacaaacatatgactAAGGTTACATGATGAAAGCTTACATTAATCGCACATATCTAAAACATTAGGATAGATTTTAGAAAGTTTGGCATTTGAGAGATGAGACTGCATTTCTTTAAGAATAAATAATGTTGAAGTCATTAAATATGTGCATCTCTCTGACATTTTTATTATCTCAGTTTAGGTGATGAGCTTTTTTTGTTTACACCATACACTaaacaatgctgggttgttgtaacccaatgttgggtcaaaaatggacaaaccGAACTATGTGGTTAAAAAGTgtacttacatttttaatttacatcccactcttttttttcccttttttttaatgatggattATTTGTACActtttgacccaatgttgggttaaatcaacccagcattttatttaaagagaaTATAATGATGAGCTCTACAATTCTATTGtcatttttttaccattttagcaaaaaaaaaaagctgggttgtttgtttatttttgacccAGCATTGGTTTAAAACATCACTGCATTTCTTTAGGAGTAAATAATGGTGTAGTCATTAAGTGTGTGCATCTGTCTGACATTTTTGATCATCTCAGTTCAGGTAATGAGGTAATTCAGGTAACAATGCTGGGCTGCAGGACTCCTGCATCTGTTACAGTGTACACTTTACCACACAATTATTAATGttgatttttgcataacaggtTGTCTTTAACGTTACAAATGTTTGTGCCTGAACGCTTTAAACTCTCTTTAAACACAATCAAATGATCAAGTTTCACCCTGTTATGGTCAAACTTTGCAATGACTCTCATGTGTTCTCAATtgttgatcaactataatcccaactcaacgcTCCTCCTGAGGCTCTCTGTGGGGCTTATTCTCCTTTTCACTTGTGATTTGACTGCCAGTATTACAATATGATCTTTTAATGCTGTGCTTTTATAACAATACCGCACTCATCGTCATATACGAGACTGTCAACATGTTCAGAATTGTGCTAGACGTTAAACCCCCTGCTCTGATGTTAACACACTAACAAATGCTTTCAACTGCAGGCCAAAAAACGACATATTTGCTTGAAACGCGTCCAATCGGAGCACTGAGTTCATCAACAAAGCGTCTCTCCTGAGGATCTGCATGCGGAGTCGTTAGCACCAATCACAGGCCAGAGCTCAGCGTGCCAAACCAATGAGAACGCTGCTAATTAGAAAATTGGTATTCATGGTAACGGGCAGCCATTGTGCTGTGACATATGCAAAgcatgtgcacgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgccagcagACATTTTGGGATTGCCCTCTCAGTCTCCACTGCCATAGCCATAAGATGGTGGCAGACAGCAGCACTGGGTGACGCTGGACAGTGGTGTGTGTTTGGAGATGCCCATCAGCTGAGGCTGGAGGAAAACTGTGTGCTTCTATGATTAAACTCATGCATGTTTTTACAAAGCAGTTCtgcagtcagacacacacacacacacacacacacacacacacacacacacacacaccttttgaTTCTCACATTCTGTCCGCATGCACAGATatacaaaagtaaataataaaaaaagcaatgctgggttatttcatgacatcaaatattgacaaacccaAATGTTGGGTTATATTTGGTGCAAAAAAAAGCCCAGTGGTTGGCTTTGTCCATGTTTGACACATAATtgaacaacccagcattttcgTAAAATGTATACCttgatgtatttaaatatttatt
>TCONS_00005945
GAAGTCATTAAATATGTGCATCTCTCTGACATTTTTATTATCTCAGTTTAGGTAATGAGGTAATTCAGGTAACAATGCTGGGCTGCAGGACTCCTGCATCTGTTACAGTGTACACTTTACCACACAATTATTAATGttgatttttgcataacaggtTGTCTTTAACGTTACAAATGTTTGTGCCTGAACGCTTTAAACTCTCTTTAAACACAATCAAATGATCAAGTTTCACCCTGTTATGGTCAAACTTTGCAATGACTCTCATGTGTTCTCAATtgttgatcaactataatcccaactcaacgcTCCTCCTGAGGCTCTCTGTGGGGCTTATTCTCCTTTTCACTTGTGATTTGACTGCCAGTATTACAATATGATCTTTTAATGCTGTGCTTTTATAACAATACCGCACTCATCGTCATATACGAGACTGTCAACATGTTCAGAATTGTGCTAGACGTTAAACCCCCTGCTCTGATGTTAACACACTAACAAATGCTTTCAACTGCAGGCCAAAAAACGACATATTTGCTTGAAACGCGTCCAATCGGAGCACTGAGTTCATCAACAAAGCGTCTCTCCTGAGGATCTGCATGCGGAGTCGTTAGCACCAATCACAGGCCAGAGCTCAGCGTGCCAAACCAATGAGAACGCTGCTAATTAGAAAATTGGTATTCATGGTAACGGGCAGCCATTGTGCTGTGACATATGCAAAgcatgtgcacgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgccagcagACATTTTGGGATTGCCCTCTCAGTCTCCACTGCCATAGCCATAAGATGGTGGCAGACAGCAGCACTGGGTGACGCTGGACAGTGGTGTGTGTTTGGAGATGCCCATCAGCTGAGGCTGGAGGAAAACTGTGTGCTTCTATGATTAAACTCATGCATGTTTTTACAAAGCAGTTCtgcagtcagacacacacacacacacacacacacacacacacacacacacacacaccttttgaTTCTCACATTCTGTCCGCATGCACAGATatacaaaagtaaataataaaaaaagcaatgctgggttatttcatgacatcaaatattgacaaacccaAATGTTGGGTTATATTTGGTGCAAAAAAAAGCCCAGTGGTTGGCTTTGTCCATGTTTGACACATAATtgaacaacccagcattttcgTAAAATGTATACCttgatgtatttaaatatttatt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0008380 RNA splicing biological_process
GO:0000280 nuclear division biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005944 False 6620 lncRNA 0.37 1 43518594 43525213
TCONS_00005945 True 1234 lncRNA 0.41 2 43523570 43525213

Neighbor

gene id symbol gene type direction distance location
XLOC_002438 rasa1b coding upstream 68006 43406796 ~ 43450588 (+)
XLOC_002437 vcanb coding upstream 254709 43188678 ~ 43263885 (+)
XLOC_002436 xrcc4 coding upstream 334240 43088270 ~ 43184354 (+)
XLOC_002435 atg10 coding upstream 442387 43037064 ~ 43076207 (+)
XLOC_002434 zcchc9 coding upstream 614878 42898103 ~ 42903716 (+)
XLOC_002440 nr2f1b coding downstream 271917 43797130 ~ 43808197 (+)
XLOC_002441 NA coding downstream 303114 43828327 ~ 43938288 (+)
XLOC_002442 CR384089.1 coding downstream 468139 43993352 ~ 44024651 (+)
XLOC_002443 cldn5b coding downstream 469258 43994471 ~ 43996117 (+)
XLOC_002444 cryba4 coding downstream 516820 44042033 ~ 44051808 (+)
XLOC_002433 NA non-coding upstream 697688 42819726 ~ 42820906 (+)
XLOC_002432 NA non-coding upstream 773014 42741085 ~ 42745580 (+)
XLOC_002430 NA non-coding upstream 786600 42729946 ~ 42731994 (+)
XLOC_002429 NA non-coding upstream 795373 42720841 ~ 42723221 (+)
XLOC_002424 NA non-coding upstream 1041335 42470616 ~ 42477259 (+)
XLOC_002445 NA non-coding downstream 530536 44055749 ~ 44198211 (+)
XLOC_002447 NA non-coding downstream 855769 44380982 ~ 44383459 (+)
XLOC_002453 BX569788.1 non-coding downstream 1242175 44767388 ~ 44769521 (+)

Expression


Co-expression Network