XLOC_002444 (cryba4)


Basic Information

Item Value
gene id XLOC_002444
gene name cryba4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44042033 ~ 44051808 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004586
ACTGTACATGTGTGTCCGGCTGTGGATGTAGAAGCTGATAGTGTGGCGTTTGCACTTCTCCAGTCTGTATACATTTAACCCCTGCTTTGTGCATGGGACAATGGCAGACTCCTCCCTCGCTGCTGACCCGGGGCTTTTGCTGGGCCCTTTGCCAGGGGAGGCTTTAAAAGGGACCATGCACATGCCCAGCTTTCACTCTCACATCAGGACGTCCCAAGGGCATCGAAGCGAGGTGAGTTCTGCTCCGCTACGGCCCCCGTTTCTGTCCCCAAAAAACCTCCCTCATTTATTCATACTGACACCGAGAAGCCTTTGCGTTTGGTCTGATAATGTGAGAACGGCTCCGAAAAGTTTGCACATGCTCAAACTGAGGATTTTTGTAATGTTCATGTTGCTGTTTAGAGATGTACAGATCGGCTTGTtcatttattattgatattagttACGTTTTTAATgtgagtttttaatattttgatagtagttgtgtttattttgagttttgttttattttgattgcaGTTATGGTTTAATttgaggttgttgtttttttattgcagttatgtgtttaatttgagtttttttttattttgatagtagttatggtttaattttttttttttgattgcagtTATGTgtttaatttgagtttttttattattttaatagtagtTATATgtttaatttgagtttttttttatttaatagtagTTATGAGtttaatttgagtttttaaattattttaataggttTTATGTGTTaaatttgaggtttttttttgcttttcttcaaGCAGACGAGATGACTCACCACTGCACCAAGTTTTCTGGCCATTGGAAGATCATCGTGTATGATGAGGAGTGCTTCCAGGGCCGTCATCATGAGTTCACCTCCGAGTGCTGCAACGTGATGGAGTTTGGCTTCGAGAGCGTGCGTTCACTGAGGGTGGAGAGTGGAGCGTGGGTCGGTTATGAGCACGCTTCTTACCAGGGTCATCAGTTTGTGCTGGAGCGTGGAGAATATCCTCAGTGCGACTCCTTTGGAGGAAGCAATGCTTACCACATCGAGAGAATGACCTCCTTTAGACCAATCTCCTGCGCCAACCACAGGGAGTGCAGAATGACCATCTACGAGAGGGAGAATTACCTGGGCCGTAAAGGCGAGCTGAGCGACGATTATCCTTCCCTTCAGGCTATGGGATGGTGCAACAACGAAGTGGGTTCTCTGCGTGTTCAGTCCGGAGCGTTTGTGTGCTACCAGTTCCCTGGTTACCGTGGATACCAGTACATCATGGAGTGCGACCGCCACTGTGGCGAGTACAAACAATTCCGTGAGTTCGGTTCTCATTCCCAGACTCCTCAGATCCAGTCCATCCGCCGTATCCAGCAGTAACGCATCCCTGCTCCCTGCCAAATCTCTCATGCCCCTTTCTGCCCAATGCTAAATAAACTGTCTTTCTAAAACCTCACTGACCTCCTGTTATACATCTGTGTCCAAACACTCAAACACGCATCTGCTGAAGCCTCACAGAAACACAGAGGAGTTTTGGACACTTTCAGACTTAAAATAGGGATATGGTGTgcatttaattacacatttagAATTATTATAGAAGTAATTATTGGTGCAAAGATATGGCAAATAGAATGTGgacttcattattttttttctgcaaatgaaatgtaaacaatgaaataaaaagtgTATTTCAAAGGAAATTctctgcaacaacaacaaaaaattatatatatatatatatgtatatatatatatatatatatatatatatatatatatatataatgactta
>TCONS_00004585
ACTGTACATGTGTGTCCGGCTGTGGATGTAGAAGCTGATAGTGTGGCGTTTGCACTTCTCCAGTCTGTATACATTTAACCCCTGCTTTGTGCATGGGACAATGGCAGACTCCTCCCTCGCTGCTGACCCGGGGCTTTTGCTGGGCCCTTTGCCAGGGGAGGCTTTAAAAGGGACCATGCACATGCCCAGCTTTCACTCTCACATCAGGACGTCCCAAGGGCATCGAAGCGAGACGAGATGACTCACCACTGCACCAAGTTTTCTGGCCATTGGAAGATCATCGTGTATGATGAGGAGTGCTTCCAGGGCCGTCATCATGAGTTCACCTCCGAGTGCTGCAACGTGATGGAGTTTGGCTTCGAGAGCGTGCGTTCACTGAGGGTGGAGAGTGGAGCGTGGGTCGGTTATGAGCACGCTTCTTACCAGGGTCATCAGTTTGTGCTGGAGCGTGGAGAATATCCTCAGTGCGACTCCTTTGGAGGAAGCAATGCTTACCACATCGAGAGAATGACCTCCTTTAGACCAATCTCCTGCGCCAACCACAGGGAGTGCAGAATGACCATCTACGAGAGGGAGAATTACCTGGGCCGTAAAGGCGAGCTGAGCGACGATTATCCTTCCCTTCAGGCTATGGGATGGTGCAACAACGAAGTGGGTTCTCTGCGTGTTCAGTCCGGAGCGTTTGTGTGCTACCAGTTCCCTGGTTACCGTGGATACCAGTACATCATGGAGTGCGACCGCCACTGTGGCGAGTACAAACAATTCCGTGAGTTCGGTTCTCATTCCCAGACTCCTCAGATCCAGTCCATCCGCCGTATCCAGCAGTAACGCATCCCTGCTCCCTGCCAAATCTCTCATGCCCCTTTCTGCCCAATGCTAAATAAACTGTCTTTCTAAAACCTCACTGACCTCCTGTTATACATCTGTGTCCAAACACTCAAACACGCATCTGCTGAAGCCTCACAGAAACACAGAGGAGTTTTGGACACTTTCAGACTTAAAATAGGGATATGGTGTgcatttaattacacatttagAATTATTATAGAAGTAATTATTGGTGCAAAGATATGGCAAATAGAATGTGgacttcattattttttttctgcaaatgaaatgtaaacaatgaaataaaaagtgTATTTCAAAGGAAATTctctgcaacaacaacaaaaaattatatatatatatatatgtatatatatatatatatatatatatatatatatatatatataatgactta

Function

symbol description
cryba4 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 23. Orthologous to human CRYBA4 (crystallin beta A4).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-143 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 23. Orthologous to human CRYBA4 (crystallin beta A4).

Ensembl:

ensembl_id ENSDARG00000024548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004586 False 1807 mRNA 0.41 5 44042033 44051808
TCONS_00004585 True 1246 mRNA 0.46 6 44042033 44051808

Neighbor

gene id symbol gene type direction distance location
XLOC_002442 CR384089.1 coding upstream 17382 43993352 ~ 44024651 (+)
XLOC_002443 cldn5b coding upstream 45916 43994471 ~ 43996117 (+)
XLOC_002441 NA coding upstream 103745 43828327 ~ 43938288 (+)
XLOC_002440 nr2f1b coding upstream 233836 43797130 ~ 43808197 (+)
XLOC_002439 NA coding upstream 516820 43518594 ~ 43525213 (+)
XLOC_002445 NA coding downstream 3941 44055749 ~ 44198211 (+)
XLOC_002446 kmt5aa coding downstream 311387 44363195 ~ 44378081 (+)
XLOC_002447 NA coding downstream 329174 44380982 ~ 44383459 (+)
XLOC_002448 denr coding downstream 385272 44437080 ~ 44444714 (+)
XLOC_002449 sez6l coding downstream 529570 44581378 ~ 44672402 (+)
XLOC_002433 NA non-coding upstream 1221127 42819726 ~ 42820906 (+)
XLOC_002432 NA non-coding upstream 1296453 42741085 ~ 42745580 (+)
XLOC_002453 BX569788.1 non-coding downstream 715580 44767388 ~ 44769521 (+)
XLOC_002456 BX569788.2 non-coding downstream 855960 44907768 ~ 44907883 (+)
XLOC_002457 NA non-coding downstream 861799 44913607 ~ 44917399 (+)

Expression


Co-expression Network