XLOC_002457


Basic Information

Item Value
gene id XLOC_002457
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44913607 ~ 44917399 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005950
GCCTGTTGCACTGAATAAATGACATGAGAACAGATGATTTGCAGAGGATAATGACACATGTGCATCATggctttatttataatgtacagAGAGTGCACGTGGTCGTGACATGCAGTTGTGAGAGCAGAAAAGagaaaacactagtgtgagactgataaagGCAGCTAGAAGAGAAAACCttgtcagatttactgtcctgccaCCATACACACCTCACACACACGCGCTTATTCGTTCATTGTAATTTTATCTAAagatgattttatatacagtatttaaagagttcagatgcaaaaccctcttagcgccatctgaaattttcttctaacaCTTCCATTTTTCTCAGGCTTCTATGTCTTGGTTCAGAAATGTCACTTTTATGGTAAATATTGAGTTATTTTTAGCACTTTCAATATAAAATTACTGAACATAAACCTAAAGGCttagaaaaatgctcattgtaaaaaaaattacagatggcacttagaggtttttgcttctgaactctatctatctatctatctatctatctatctatctatctatctatccatccatccatccatccatccataaatatattaaaaactttcaaggatttaggaTGCTGTTGGTGTCAttacagtcttgtgaaaaggctcCACATGTCCATGGCTAATGATTAATCCtggttaataaatgtttatttaactcTGATAATTGATCAACAGAATAATTGACTTCagtctgttgaattattagaagaTAATGTACCACACCTGCACATTATTTTCTATAAAGagtaaggggccgatcacaccgaacactTTATGCGTCGAGGcgactttttaaaaatagtttactaACGTCCGCGAGGATTTTGCGCGCTGCTTATGCGCCATGCTTTAACCGCCTGCTGCACCTCGTGTTTTTGCCCTTACGCatgcagttgaaaaaagtcaactctgagcagaaaaagCGTGTTACGCCAGTCGTGTTTCTTTTCTGTTCTGAGTTATTCGAAACtttatgacttcacaaatcttgaacATCACAATATTATTAGATGTTAAAGTTATCAGCAGCAACACTCTCGCAAAATACCCAGCTGATGCAGTCGTTGTCTCGCGACAGAAAGCTCACagcgctcttttttttttttcttgtcaacaaaaaggcagtgaggtgcacCTCGCGTCTTTGGAATATAAACGCacattcggtgtgatcggccccttaaagttaattttcacaacaataccacagtatagccaacctagtgctgtgtttgttcctgtcattttccTGACGATTGATACAAAGACCTACGCTGCATTGTGGTATTTGTCAGCCATTTGACAACACTTTGTATATGTGTTGTGTTTCTGTGACCacctacagcaggggtcaccaatctcagtcctggagggccggtgtcccagcAGGGTTTAGTGTTTGCTTAGGGTTGGGGctgaaatctgcaagacaccggccctccaggaacaagtttggtgtatataatattgcatataatttatatatatatatatatataccacaatATAATTGGTtgcatataatataatgttttctAGCATTAACACCATTATTGCACACATTTAACACCACAATCTTCAAGTTACACTCAAAACTCTTGAAAGCAGTGTTTAGAGTGATGATAACCTGGGGTTAAGCGCAATGTGAAAAGCCATATTCTCTGCCCTGTATTTCAGCAACCTAGTCTCCTCTCCATTAAATCCAGCCCACAGAGTTTAGTCACAGATTTTGTGCGGACCTGCTTGATGGTTAACACTATTAATTTCTGTTAGTTTGCTTAACATAAAATGCTGTGAGATGCATTGAGATTATAATTCAGAATGAAACGTCATTGACATGATTTcgggttattgcttttcttgtaaaTACTCCTGACTGactgaaaatgacatttttgtttaaatcagGTGGAAATTATTCTTATGCATATATAAGACAATTGTACTGTGTACTTTTGTATTTGTGTGAGAAAAAACACTGTAATGATAATGAGAAAACATTAGCATTTTGGACTCCTGGGTTAAAACTGACCAAAGATGCACTCCGTCTGTACCCCGAGCGCTTCTGATAATAGCATATTTGTTGAACTTAACccttaatcagtttttatttatacCTCTACTGTTCACACACTCCTGTGGCATTAATAGACCAGCCTGACTGTAGGTCTGCTGTTGGAAACACTTTCTTAGAAGAAATCAAACAGTTTAATTATCCTTAACTGAAGCGAAATACACTTAAAAGAGCTAGCATATTAAATCTAAGACAAGAACTATAttattcaaataaacaaacactgttTACAATGTAAAGTGATCTATTTTGGCTCTGTATAACTGATGAAATCTGTCTTTGCAGAGAAGTGCCGGtactttgatgtaaaaaaaaaaacaattgtcatgCTGGGTTGTGACAGTTCTTGTGCACGTTTTATATGAAGGATGTTATTATGCAAGTGTGTCAcgaaagaaaagtcacttatactGATGTAAGTACAGGTAAAAGAAATCAAATGTGCCTTGCAACAGAACAAACAAGTGACGTTTAATGAAGACGAATAAAGCATTT

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005950 True 2604 lncRNA 0.37 2 44913607 44917399

Neighbor

gene id symbol gene type direction distance location
XLOC_002456 BX569788.2 coding upstream 5724 44907768 ~ 44907883 (+)
XLOC_002454 SLC4A5 coding upstream 12163 44811700 ~ 44901444 (+)
XLOC_002453 BX569788.1 coding upstream 144086 44767388 ~ 44769521 (+)
XLOC_002452 scarb1 coding upstream 165337 44699734 ~ 44748270 (+)
XLOC_002451 ubc coding upstream 218875 44692272 ~ 44694732 (+)
XLOC_002458 sec14l7 coding downstream 7285 44924684 ~ 44939658 (+)
XLOC_002459 cnnm4a coding downstream 23294 44940693 ~ 44942231 (+)
XLOC_002460 il1b coding downstream 37707 44955106 ~ 44964776 (+)
XLOC_002461 h2az2b coding downstream 67547 44984946 ~ 44998452 (+)
XLOC_002462 gnsb coding downstream 113999 45031398 ~ 45047242 (+)
XLOC_002447 NA non-coding upstream 530148 44380982 ~ 44383459 (+)
XLOC_002445 NA non-coding upstream 715396 44055749 ~ 44198211 (+)
XLOC_002442 CR384089.1 non-coding upstream 888956 43993352 ~ 44024651 (+)
XLOC_002465 NA non-coding downstream 223545 45140944 ~ 45145137 (+)
XLOC_002467 CT956056.1 non-coding downstream 320557 45237956 ~ 45238042 (+)
XLOC_002470 NA non-coding downstream 438304 45355703 ~ 45356324 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G388817 NA non-coding CI01000204 null 477214 ~ 478418 (+)