XLOC_002447


Basic Information

Item Value
gene id XLOC_002447
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44380982 ~ 44383459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005949
CACGATTTGAGACAGAATATGGTATAAAATAGTTTAATACACAATGAGATGAGTTATGCATAATCCTTCATGACAATACATCTGGATTAATCTCAGTTCTGGAGTTCATTTCTAACAGTTCAAATAAAGCCCAGCGGCATCAAACCCACACGCTCATGCTTTCACCATTATTATTACTAAACCTTATTGCTTCAGCAGGACATGATGGATTATTAATACTGCAGAAATTATACACCTTCctgtgaacatttatttattttttatatttcccaagcgctgtttaacagagcaaggacatttttcacaatatttcctatatttCTTTTTCCGGGGAAAGTTTTTGGCTAATATAAAGTTTTGTAAAAATAACTGTGGTCAATATTTTTAACCCCATTAAGAAATTGAttcttaagcctttaaatgtcactttaagccgaaTACAAGTATCCTGAAAAAATCTAGTAAACTATTATGGGCTGTCCTCATGCCAAAGAGAAATGAAATGatttattagaaaggagttattaaagctattatgtttgaAAAATGTCTTCAAAATAATGTCAGACAGCatttcagaaatatatataaattcaattTCACAGGAAGGCGAATAAATATCTAGTGTTTAGAATGTGAAGATGTTGAGAAAATGAGTACAGTAGATTTACAGTGTGAGGAGTTGTGCATGTGTTGTTCAGCTTCACTCATCACTCATTTACAGTTGCAGTCAACTCTGACTTTAGATCATACTGGCAATAAAATATGACCCTGGAGCACAAACATAGTCATATATTGCACAGGTGTATTTGTAGCAACAGCCGACAAAACACTCAATCAGCCAAAATGATGGATTTATCTTTAATACCAAAAATCATTCAAGTAAAGATCACActtcatgaagacattttgtacatttcctactgtaaatagaTCAAAACTTCACTGTTgattagaaatatgcattgctaagaatggAATTTGATCAACCGTAAAAatgattttctaaatatttagatttttttcagattttctaATAATTTTATCCCAGTCAAATATTGTCCATCATAAACAATTCACCAATAGaaagattatttatttagtttgttgctCCAGGGTCACAAATGTAATGTTAAAGTTCAAAACTAGCTCAAAAATCTGAAAGTAACTGGCACTTTTAAACCAATACTTTTTAAAGTATCAAACTTTAAACCAATACTTTTCAAATCGATACTTTAAAACCGATACATTAAAAAGTACCAAACTTTTAAACcaatacttttaaaatttatACTGTTAAACTGACACTTCTAAAGTGATACATTTAAAAAGCATCAAACCTTTGAACCGATACTTTTTAAATCcatactttataacttatacattTAAAAGTATGGAACTTTTAAACTGATACATTTAAACTGATACTTTTGAATGTATGGAACTTTTAAACTGACTCTTTTATCCAGCAATGATCAAAGCTGTAAAACCTTTCAAAAGATTTGAAACAAATGataggggtaaagttggtttaatattcgcaTATTCAGACAATCtccttaataaaataatttcagaaaagtattctttgcaaattctaaatagggaaatcatattagcagcaaatgactatcaaagtacaacattgttcacagtgaataagatagtgttaatgctgttttaaagtcatacttgcatgctaatttcaATCGAATGTTCAACATAACATGGTAAACAATCTAGAgattctaaatgaatgaatgtgtgaatataaaaccaactttacctctataaacaAATGCTGTGGTTTTGATCTTTAAAGACTGATAATAATCCTCATAACGCTGTCTTGATCATCAAATCCTCATTTAAAACAGATTTCTAAACGTGACTGAAATTCAGTGTTTATAGTACTGTATGTTCATTTAATAAACAGCTTACATCTTTAAATGTAAGACCACCTCAGTTTCTACTGTATTTGTGATCAGGTAAATGTGGCATCGGGGAGTTTTAAAGGGAAACCTCTTCTAGAACAAAAATACTATttactttagaaaaaaatatagagTTTTCCATCAAACAAAGACTTTAAAAGGCACGTCTATGATTGAAATGCTGCATTGACGATGATTCTGTAAATCCATCTAGTGCTAGTGCTAACGCTGAGCTGAAATGAAGTGTGTGAACGTCTGCAGCAGGCCAATGCACATTCAATACTAAAGCTGTGATCTTCCTTAAAACCCTTGAGGACAAAAGTAAAGTGCAGGATCTACGCAAACACCCAAACTTTGCTAAGTGCTCATGTTTTGGCTTTGACAAATGCACATATTGcacaaagattatatatatatatatttagtgctcagcataattgagtgtTTCTCATACTGTAATAATTTCTCCA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006413 translational initiation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005949 True 2404 lncRNA 0.31 2 44380982 44383459

Neighbor

gene id symbol gene type direction distance location
XLOC_002446 kmt5aa coding upstream 2901 44363195 ~ 44378081 (+)
XLOC_002445 NA coding upstream 182771 44055749 ~ 44198211 (+)
XLOC_002444 cryba4 coding upstream 329174 44042033 ~ 44051808 (+)
XLOC_002442 CR384089.1 coding upstream 356331 43993352 ~ 44024651 (+)
XLOC_002443 cldn5b coding upstream 384865 43994471 ~ 43996117 (+)
XLOC_002448 denr coding downstream 53621 44437080 ~ 44444714 (+)
XLOC_002449 sez6l coding downstream 197919 44581378 ~ 44672402 (+)
XLOC_002450 tpst2 coding downstream 294173 44677632 ~ 44691944 (+)
XLOC_002451 ubc coding downstream 308813 44692272 ~ 44694732 (+)
XLOC_002452 scarb1 coding downstream 316275 44699734 ~ 44748270 (+)
XLOC_002441 NA non-coding upstream 442694 43828327 ~ 43938288 (+)
XLOC_002439 NA non-coding upstream 855769 43518594 ~ 43525213 (+)
XLOC_002433 NA non-coding upstream 1560076 42819726 ~ 42820906 (+)
XLOC_002453 BX569788.1 non-coding downstream 383929 44767388 ~ 44769521 (+)
XLOC_002456 BX569788.2 non-coding downstream 524309 44907768 ~ 44907883 (+)
XLOC_002457 NA non-coding downstream 530148 44913607 ~ 44917399 (+)
XLOC_002465 NA non-coding downstream 757485 45140944 ~ 45145137 (+)
XLOC_002467 CT956056.1 non-coding downstream 854497 45237956 ~ 45238042 (+)

Expression


Co-expression Network