XLOC_002446 (kmt5aa)


Basic Information

Item Value
gene id XLOC_002446
gene name kmt5aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44363195 ~ 44378081 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004590
ATGTTTCCTGCCGTGAATGAGATAAAAGTGCAAACATGGCGGCGTGAGCAGCGGGGAGAGTGTCCGCGGAGGAGCGCTCAGTGTCGGCTGTTTTCCTGCGCTCACCGTGAATGCGCTCCAGCGGCCCGGAGCCTGGAGAACCGCGGACCGGAGAACCGCACAGCCCGGCCAGAGGCGACCATGAGCGGGgaCGTCCTGTGTAACGGACACTCGGCGTTTCACCGCCTGCTGAAGCACAGCAGCTCCAGAACTCATGAAGCGCTCGCTGTGAAGATCATCCAGGAGAACAAAAACACACGCCTGTTCTGCACAGCGCCCGagcccagGAGAGACAGTGGTGTAAATGGCGAGTTCCTCCTCAACAGTGCAGAGCTGCAGGACGAGCAGACGCTTCCACTGCACTGCATCCACAGCGCTGCTGACATCACTTCCTCTAAACACAGGAAGCCGGCCCGCCGCAAAGTCAAGAGGTCCACCAAGAGAGCTGCTGAGAGCAAGAGTCCTGCAAACCGGAAGGTCACCGATTATTTCCCCATCAGAAGAAGCTCCAGAAAGAGCAAGAGTGAACTGAAGTATGAAGAGAAGCAGCACATCGACACACTGATCAGCAACGGCATCGAGGACGGGATGATGGTGCGCTTCATCGAGGGGAAGGGTCGTGGGGTTTTCGCGACGCAGCCGTTCCAGAAGGGTCAGTATGTGGTGGAATATCACGGAGATCTGCTGCAGATCACAGACGCCAAGCAGAGAGAGGCTCTATACGCACAAGACCCCTCCACCGGCTGCTACATGTACTACTTCCAGTATCTCAGCAAAACATACTGTGTGGACGCTACGAAGGAGTCGGATCGGCTGGGCCGGCTCATCAACCACAGTAAAAACGGGAACTGTCAAACCAAACTGCACGCCATCGCCGGAAAACCTCACCTGATCCTGGTGGCGTCCAGAGACATCCAGGAAGGAGAAGAGCTGCTGTACGATTACGGCGACCGCAGTAAATCCTCCATCGAGGCGCACCCGTGGCTCAAACATTAACACCGTCTCTCATCTAGACCCTTTTAATCGAATTATTGCCTTAGGAAACAGAATGTCGGGGATAGTGAGTGTTACACATGGTAGATTTGCGGTACTGTCCTACTTTTAAGATATTTATCCTGCTCTATGACATGCTAGTTTCggcacattttctttttttgtatgttttatatattggTAGATCAGTGCTTCCAAAGCATGCAGTTATAGTCCAACTTTCTGCATTTTTATAAAGGGTTTTCTTAATCTAATGTAAGGTAGTTTAGAGGCTTAGCAATAATTATTTATGATGCCCAAACATTTGTGTTTGAAGCAGAAAGCCGGAGACGCTAACTAACATAAGTAGGAGCGGCGTTTTAAAACAAGGTTCAGAAAACTGGAATGTGAAGGCTAACTTTGatattatttgaaacattaacgTTGTGCAAATGAGTGTGTGTCGTGATTAATCTGAACAAAAACTGTATATCTGTTACACACAATGACCAAACGCTCCTACGGAAGCAGTTCCAGTCCATCTGTTTGATgacgacgacgatgatgatgatgatagttaaataaatgattttatgcAATGATTGCTGCTGTTGTCATTTACAGCTTATTATATAGCACTGAATTGACTTGATAGTCATGCTTTGCATCAATCGATTGGGTTTTAAAGAGCAACTAATCAAAGAAAATAAACACACTACTTTATCGCAAATATTAACCAATTCTGAgcacaaacaagatattttgaagaatatttggCTAAAAATGAGCCACTGatgacctccatagtaggaacaagTAATACTATTGAAGTTAATGGCTGTTTTCTTCTATAAGaaacaacagaagaaagaaactcaaacaggtttggaaaaatgtgtaaatgacagaataaaagatttggttgaactgtccctttaataaagAGGACCTAACAATATATACTTAACATTAGAATGTGACTGcataagtttttgtttttaaacaattatccTATAAATATGGTCTCAAAcacgattcctggagggccacagctctgcatagtttagctccaacctgcttaATAATCTCtggtagtcttgaacaccttcatTAATTGATCagctgtttaattagggttgactAATCACATTTTGTCTATTATAGGAATCATTGTTATCTCAAATATTTATCCTTGAAGTTTTTACACAATTTCCATCAGACTCAGGTTTGGTAACATCACCTAATCTTGACTATATTTTAATAACTCGCACGGCTCTGAATACGTGCGCCATTTTGTTTTGTGAATATATCTATACTCTGATCGGCGATGATTTCACCTATATTCGGACTATTTCGTTATTTTAAACGTGATCGTAGACAGTTTAATTCCACTCAATGTGCTTTCTACCAACATAAACTAACATTTGAGCATTTAATTTAACGCTGAGATCAACAAAGGACGCCTCGAGTACAGGTTTGCGCGGGAAGCGGCTCAGACTCGGTGACGTCAGCGATCTGCGCCCGCGGCCCGTTAACAGCGCAGCCACGGTTTCCGCACGGACATGATTTGAAGACGGCGCACACACTTGAG
>TCONS_00004591
GAAGACGGCGCACACACTTGAGATGGAGTGGAGTCCGGTGGCGAAGGTGTACGACCCTCTGAAAGCGGGCAGCATTGACGGCACAGATGTGGAACCTCATGATGCGGGGGTGTGGCGGGCGATGCTGGCGCGCTATAAACCCAACAGAGGAGTCTGCGGAGACCCTGACCTCACTCTGTTCGTGGCCCGCCTCAACCCGCAGACCACCGAAGAAAAGCTCCGAGACGTCTTCTCCAAGTTCGGGGACATCCGGAGgctGCGTCTGGTGCGGGACGTGGTGACGGGTTTTTCCAAACGCTACGCCTTCATCGAGTATAAAGAGGAGCGTTCGCTGAAGAGAGCCTGGCGGGACGCTAATAAGCTGATCCTGGATCAGTATGAGCTGCTGGTGGATGTGGAGCAGGAGCGAACGCTGCCCGGTTGGAGGCCCCGGCGCCTGGGTGGAGGACAGGGCGGACAGAAGGAGTCCGGACAGCTGCGCTTCGGAGGACGAGACAGACCCTTCCGGAAGCCCATCAACCTGAGCACCAGGAGACCCGCGGAGCCCAGAGGGAGAGAGACGGAGCGGGAGCGGGACAGGAGAGACTACAGAGACAGGAGACACGAGAGAACACACACAGAGGACAGAACACACCGACAcacatactgacacacacacacacacacacacacgtggaaCCCAGATGGAGAGAGACAGAGCGGGGACACCAGAGAGAGGAGActcgaaaacacacacacacacacacacacacacacacacac

Function

symbol description
kmt5aa Predicted to enable histone-lysine N-methyltransferase activity. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of gene expression. Predicted to be located in chromosome and nucleus. Is expressed in blastoderm; blastodisc; brain; and intermediate cell mass of mesoderm. Orthologous to human KMT5A (lysine methyltransferase 5A).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051301 cell division biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-37 Predicted to enable histone-lysine N-methyltransferase activity. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of gene expression. Predicted to be located in chromosome and nucleus. Is expressed in blastoderm; blastodisc; brain; and intermediate cell mass of mesoderm. Orthologous to human KMT5A (lysine methyltransferase 5A).
ZDB-GENE-050706-77 Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP35 (small nuclear ribonucleoprotein U11/U12 subunit 35).

Ensembl:

ensembl_id ENSDARG00000099913 ENSDARG00000105231

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004590 False 2602 mRNA 0.45 7 44363195 44373370
TCONS_00004591 True 762 mRNA 0.60 3 44373349 44378081

Neighbor

gene id symbol gene type direction distance location
XLOC_002445 NA coding upstream 164984 44055749 ~ 44198211 (+)
XLOC_002444 cryba4 coding upstream 311387 44042033 ~ 44051808 (+)
XLOC_002442 CR384089.1 coding upstream 338544 43993352 ~ 44024651 (+)
XLOC_002443 cldn5b coding upstream 367078 43994471 ~ 43996117 (+)
XLOC_002441 NA coding upstream 424907 43828327 ~ 43938288 (+)
XLOC_002447 NA coding downstream 2901 44380982 ~ 44383459 (+)
XLOC_002448 denr coding downstream 58999 44437080 ~ 44444714 (+)
XLOC_002449 sez6l coding downstream 203297 44581378 ~ 44672402 (+)
XLOC_002450 tpst2 coding downstream 299551 44677632 ~ 44691944 (+)
XLOC_002451 ubc coding downstream 314191 44692272 ~ 44694732 (+)
XLOC_002439 NA non-coding upstream 837982 43518594 ~ 43525213 (+)
XLOC_002433 NA non-coding upstream 1542289 42819726 ~ 42820906 (+)
XLOC_002453 BX569788.1 non-coding downstream 389307 44767388 ~ 44769521 (+)
XLOC_002456 BX569788.2 non-coding downstream 529687 44907768 ~ 44907883 (+)
XLOC_002457 NA non-coding downstream 535526 44913607 ~ 44917399 (+)
XLOC_002465 NA non-coding downstream 762863 45140944 ~ 45145137 (+)

Expression


Co-expression Network