XLOC_002448 (denr)


Basic Information

Item Value
gene id XLOC_002448
gene name denr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44437080 ~ 44444714 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004593
ATGGCTACTACTGAGAACGCAGAGTCAGGTTCGCCAGAAAATAAAGTGGATCGAGCCGACCCCGATGCAAAATACCCACTGAAAGTGCTCTACTGTGGAGTGTGTTCCCTGCCTGCAGAGTACTGCGAGTACATGCCTGAGCCGGCCAAATGCAAACAGTGGCTTGAGAAGAACTTTCCGGATGTGTTTGCCAAACTGACTCTCGGTACAGCACCCAAACAGGAGAGCaaaggaggtggaggaggagaagATGGTGGTGGAGGCAGAGGAAGAGGTGAGGCGCCCCCTGCTGGAGAGGAGGAGGAAAAGAAGAAACAGAAAAGAGGTGGAAGAGGTCAAATCAAACAGAAAAAGAAGACCGTCCCTCAAAAAGTCACGATAGCAAAAATCCCCAGAGCCAAAAAGAAATACGTGACGAGAGTGTGCGGTCTGGCCACGTTCGACATCGAGCTGAAAGAAGCGCAGAGGTTTTTTGCTCAGAAATTCTCCTGCGGCGCCTCCGTGACGGCAGAAGACGAAATCATCATTCAGGGAGACTTTACAGACGATATAATCGACGTCATCCAGGAGAAGTGGCCCGAGGTGGACGACGACAGCATCGATGATCTGGGAGAGGTCAAGAAGTGAAGCCTGTATGCACTTTTACTGAGAAACCGATGCGACGCAACACCGCCAAAtgtacacatccacacacacacacacacacacacacacgtcaacaacccttttatatctattttatttactgtatagaATTTCCGTGGACTTGGCCTGATCCTGGGGGGTTTCAGTTCTCGATAGCTGCTTTCTCTCGCGGTTGCCAAAGGTCTGGAATGATGTGACTTAAAGCATTTCACTCATTAAACAGTAGACTAATAAATTTGGGTCTCATTCGACACACTCCTCTTGTCTCTTGTGAgttttttacatcttttttttataacattttaattgttaatCACAAAACACATTACAACAAACTACCAGACAATGCCTATCAACCATGCTAACAACAAACTTCATAATATGTATTATATTCATAATTtacataaataattacaattataatagCCATAAATTCAATAAGtatataaatcaaattaaataaacagttgaagtcataattattagccctctttttaattatttcctgaatgatgttgaacagattcaggagttgttcacagtgtttcctctaatatttgttcttctggagaaagtctgatttgttttatttgggcttgaataaaagcagtttttaacagttttaaagtcatttaaaggtcaatattattcgccccttcagcaatattagtgttggattgtctccagaacaaaccactgttatacaatgacttgcctaattaccctaactttaccctaattaccctagtgaagcctttacatgtcactgtaagctgaacactagtgtcttgaagaatatctagactaatattatgtgctgtcatcagaaattagttattagaaattcaactcactctgaacggatcaattgaatcagtgagtcgtttactggagactcactctgaacggatcatttgaatcagtgagtcgtttactggagactcactctgaacggatcatttgaatcagtgagttttttTACCCTTTAATTTATTACTAACCTGTATGGTGTCACTTTTCATGCAAAACAGAAAATGAAATGGATAATTAATTCATATTTGATTAATCATGTTATCTTTTATTATCTTATGATTTGCATCTAAAGTATTATGCCAAAAGATTAAAAGAAAGACCCCTGGACCAAACATGCACATGCAGCTCTAGTTTCATCTTTAAACTCTCTGTTAAGGTCATTTAATTGAGTTTACTCACAGTGTCCTTTGTGGAGAACATCAGTGTAGTGTCATTCAATTCTGTTCCGCATCTTCATCAGATTTCCTCCCACCTTCACAACAAAAAACGTACATTTAGTCAGCAATGCAATATTCCGgttttgctgtatttgtgtttTCTGCCTCTAATATTTCTTGCCCATAAGTTGACTTTGGTTTATGAAAGGCTCTCTGCATTTTGCTCATTAGAAATGGTTTAAGACTTTTATTATGACCTTGATGATGACAGCAAAACTTGGAAAGAATTTCGTTTGCATTGCTATAATGACAATAAATCATATATTAAATTATGTCACCCCAAAAGAACAAACTATACAATAtcgttttattttgcattttaaagggCCAGCTCATCCCTAAACAAAATGTTTTACCATTTACTCAC
>TCONS_00004592
ATGGCTACTACTGAGAACGCAGAGTCAGGTTCGCCAGAAAATAAAGTGGATCGAGCCGACCCCGATGCAAAATACCCACTGAAAGTGCTCTACTGTGGAGTGTGTTCCCTGCCTGCAGAGTACTGCGAGTACATGCCTGAGCCGGCCAAATGCAAACAGTGGCTTGAGAAGAACTTTCCGGATGTGTTTGCCAAACTGACTCTCGGTACAGCACCCAAACAGGAGAGCaaaggaggtggaggaggagaagATGGTGGTGGAGGCAGAGGAAGAGGTGAGGCGCCCCCTGCTGGAGAGGAGGAGGAAAAGAAGAAACAGAAAAGAGGTGGAAGAGGTCAAATCAAACAGAAAAAGAAGACCGTCCCTCAAAAAGTCACGATAGCAAAAATCCCCAGAGCCAAAAAGAAATACGTGACGAGAGTGTGCGGTCTGGCCACGTTCGACATCGAGCTGAAAGAAGCGCAGAGGTTTTTTGCTCAGAAATTCTCCTGCGGCGCCTCCGTGACGGCAGAAGACGAAATCATCATTCAGGGAGACTTTACAGACGATATAATCGACGTCATCCAGGAGAAGTGGCCCGAGGTGGACGACGACAGCATCGATGATCTGGGAGAGGTCAAGAAGTGAAGCCTGTATGCACTTTTACTGAGAAACCGATGCGACGCAACACCGCCAAAtaATTTCCGTGGACTTGGCCTGATCCTGGGGGGTTTCAGTTCTCGATAGCTGCTTTCTCTCGCGGTTGCCAAAGGTCTGGAATGATGTGACTTAAAGCATTTCACTCATTAAACAGTAGACTAATAAATTTGGGTCTCATTCGACACACTCCTCTTGTCTCTTGTGAgttttttacatcttttttttataacattttaattgttaatCACAAAACACATTACAACAAACTACCAGACAATGCCTATCAACCATGCTAACAACAAACTTCATAATATGTATTATATTCATAATTtacataaataattacaattataatagCCATAAATTCAATAAGtatataaatcaaattaaataaacagttgaagtcataattattagccctctttttaattatttcctgaatgatgttgaacagattcaggagttgttcacagtgtttcctctaatatttgttcttctggagaaagtctgatttgttttatttgggcttgaataaaagcagtttttaacagttttaaagtcatttaaaggtcaatattattcgccccttcagcaatattagtgttggattgtctccagaacaaaccactgttatacaatgacttgcctaattaccctaactttaccctaattaccctagtgaagcctttacatgtcactgtaagctgaacactagtgtcttgaagaatatctagactaatattatgtgctgtcatcagaaattagttattagaaattcaactcactctgaacggatcaattgaatcagtgagtcgtttactggagactcactctgaacggatcatttgaatcagtgagtcgtttactggagactcactctgaacggatcatttgaatcagtgagttttttTACCCTTTAATTTATTACTAACCTGTATGGTGTCACTTTTCATGCAAAACAGAAAATGAAATGGATAATTAATTCATATTTGATTAATCATGTTATCTTTTATTATCTTATGATTTGCATCTAAAGTATTATGCCAAAAGATTAAAAGAAAGACCCCTGGACCAAACATGCACATGCAGCTCTAGTTTCATCTTTAAACTCTCTGTTAAGGTCATTTAATTGAGTTTACTCACAGTGTCCTTTGTGGAGAACATCAGTGTAGTGTCATTCAATTCTGTTCCGCATCTTCATCAGATTTCCTCCCACCTTCACAACAAAAAACGTACATTTAGTCAGCAATGCAATATTCCGgttttgctgtatttgtgtttTCTGCCTCTAATATTTCTTGCCCATAAGTTGACTTTGGTTTATGAAAGGCTCTCTGCATTTTGCTCATTAGAAATGGTTTAAGACTTTTATTATGACCTTGATGATGACAGCAAAACTTGGAAAGAATTTCGTTTGCATTGCTATAATGACAATAAATCATATATTAAATTATGTCACCCCAAAAGAACAAACTATACAATAtcgttttattttgcattttaaagggCCAGCTCATCCCTAAACAAAATGTTTTACCATTTACTCAC

Function

symbol description
denr Predicted to enable mRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and translation reinitiation. Predicted to act upstream of or within translational initiation. Is expressed in midbrain; myotome; optic vesicle; and retina. Orthologous to human DENR (density regulated re-initiation and release factor).

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002188 translation reinitiation biological_process
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040718-450 Predicted to enable mRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and translation reinitiation. Predicted to act upstream of or within translational initiation. Is expressed in midbrain; myotome; optic vesicle; and retina. Orthologous to human DENR (density regulated re-initiation and release factor).

Ensembl:

ensembl_id ENSDARG00000037229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004593 False 2262 mRNA 0.39 7 44437080 44444714
TCONS_00004592 True 2187 mRNA 0.39 8 44437080 44444714

Neighbor

gene id symbol gene type direction distance location
XLOC_002447 NA coding upstream 53621 44380982 ~ 44383459 (+)
XLOC_002446 kmt5aa coding upstream 58999 44363195 ~ 44378081 (+)
XLOC_002445 NA coding upstream 238869 44055749 ~ 44198211 (+)
XLOC_002444 cryba4 coding upstream 385272 44042033 ~ 44051808 (+)
XLOC_002442 CR384089.1 coding upstream 412429 43993352 ~ 44024651 (+)
XLOC_002449 sez6l coding downstream 136664 44581378 ~ 44672402 (+)
XLOC_002450 tpst2 coding downstream 232918 44677632 ~ 44691944 (+)
XLOC_002451 ubc coding downstream 247558 44692272 ~ 44694732 (+)
XLOC_002452 scarb1 coding downstream 255020 44699734 ~ 44748270 (+)
XLOC_002453 BX569788.1 coding downstream 322674 44767388 ~ 44769521 (+)
XLOC_002441 NA non-coding upstream 498792 43828327 ~ 43938288 (+)
XLOC_002439 NA non-coding upstream 911867 43518594 ~ 43525213 (+)
XLOC_002456 BX569788.2 non-coding downstream 463054 44907768 ~ 44907883 (+)
XLOC_002457 NA non-coding downstream 468893 44913607 ~ 44917399 (+)
XLOC_002465 NA non-coding downstream 696230 45140944 ~ 45145137 (+)
XLOC_002467 CT956056.1 non-coding downstream 793242 45237956 ~ 45238042 (+)

Expression


Co-expression Network