XLOC_002443 (cldn5b)


Basic Information

Item Value
gene id XLOC_002443
gene name cldn5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43994471 ~ 43996117 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004583
AGAAACTCCTCAAGCACTTCATCTGAGCGATGTAGAGACACTTCTGCTGCTTCTGACAGATTTAGagtttggagaaaaaaaacaaaaacaatggcaaATATGATTTCTGCATGTCTGGAGATTGTTGGACTCTGCTTGACCGTCACCGGGACTCTTTTGGTGATGGTAGCCTGTGGGTTGCCCATGTGGAAAGTGTCCGCCTTCATTGAAGGCAACATTGTGGTGGCGCAAAACATCTGGGACGGGCTGTGGATGTCCTGCGTTGTTCAAAGCACAGGTCAGATGCAATGCAAAATGCACGACTCTGTCTTGGCGCTGACCACTGACCTCCAGACAGCTCGGGCTCTGACTGTCATCTCTGCGGTTTTGGGGGTCCTGGCTCTCATGATAACCATCGCCGGTGCTCAATGCACCAATTGCATCAACACGGAGTCCATCAAATCCAAAGTGGTCAACGCCGGAGGCGTGATGTACATCGTCGCAGGCTTGTTTGTTCTGATTCCTCTGTGCTGGATGGCCAATAACATCATCTCAGACTTCTACGATCCTCAAGTTCCCTACGCCAAAAAGAGAGAAATCGGAGCTGCGCTGTACATCGGATGGGCAGCATCTGCAATGCTTCTGGTCGGAGGAGCGATTCTGTGTTTCTCCCGTCCACATGATGAGAAATCCACATATCCACTTAAATATATCCCTCCGCCGACAAAAGGCACATCGATCAATGGGGACTATGATAAACGAAACTACGTCTGATCAAGAGGCTAACTATATGGACTTTTGCAGGTGCAAATGGACTTTTAAAACGATAATGCTGATGATACACCGTGGACCTACTTTGGGAAATGATCCCATAGGCAACTAGGTGTTACTAATTAGGGCAATGGGATCCAGATACAATATTGTTGCCTATTCTTAATGGAAAAGCAACTTTACAACATTGCAAAATCGCTCAAAAAGTCGCcctgtgtatcatcagcataagGGTAGCTTACCGATaagcatgttttttatgttttgtacaCATTTGTACTGATCTTCAATTCTTTTATATGACTGTACAGTgtaagaattatttttaaagtgcaaatgtTGCAGGTCATATTgataaaaatgccatttttttacATGCAACAAGTCTTGTATTGAactagtcaacatttaaagtggatcaagaGTGACCCAAGACAAGAGTGGGTATTGTTCTGATGTTTTTCCTAGTTTTTTTAATCCAATTCAAATGTACTGTAGATTCATTTCAGTGAAACAGCATTGCATACTTGCATTTGAAAGCTATTTAATATGCTCTATTAACCGAAGGTCGCGGTAATAACGAATTAAATGCACACGGGTATTTTTGGTCTTCGTTAATGATATTAGGGTCAGCGACCCACTTGTTTGTGTTCGATTTTTATCACTGTGGCTCAAGGGGGGTGAAGGGAGGGTCCATATTTCTTGTTTTTGTTCTGCTTTACTAATTAGACACGGTCTGTGCTTCAACGAGACACTGAATAATGTCTATTGTTCTGCCTGTAAACGTGCAGGCAGGCTGGTTTGATCATCTAAACCTCCTGATTGTACATAATTGTATGAAACTTTTTAgtaaatttgtgcatatacaaagtaataaataaaatgtttttttgttaa
>TCONS_00004584
ATGATTTCTGCATGTCTGGAGATTGTTGGACTCTGCTTGACCGTCACCGGGACTCTTTTGGTGATGGTAGCCTGTGGGTTGCCCATGTGGAAAGTGTCCGCCTTCATTGAAGGCAACATTGTGGTGGCGCAAAACATCTGGGACGGGCTGTGGATGTCCTGCGTTGTTCAAAGCACAGGTCAGATGCAATGCAAAATGCACGACTCTGTCTTGGCGCTGACCACTGACCTCCAGACAGCTCGGGCTCTGACTGTCATCTCTGCGGTTTTGGGGGTCCTGGCTCTCATGATAACCATCGCCGGTGCTCAATGCACCAATTGCATCAACACGGAGTCCATCAAATCCAAAGTGGTCAACGCCGGAGGCGTGATGTACATCGTCGCAGGCTTGTTTGTTCTGATTCCTCTGTGCTGGATGGCCAATAACATCATCTCAGACTTCTACGATCCTCAAGTTCCCTACGCCAAAAAGAGAGAAATCGGAGCTGCGCTGTACATCGGATGGGCAGCATCTGCAATGCTTCTGGTCGGAGGAGCGATTCTGTGTTTCTCCCGTCCACATGATGAGAAATCCACATATCCACTTAAATATATCCCTCCGCCGACAAAAGGCACATCGATCAATGGGGACTATGATAAACGAAACTACGTCTGATCAAGAG

Function

symbol description
cldn5b Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including cardiovascular system; eye; integument; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-140 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including cardiovascular system; eye; integument; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).

Ensembl:

ensembl_id ENSDARG00000014059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004583 False 1647 mRNA 0.42 1 43994471 43996117
TCONS_00004584 True 661 mRNA 0.51 1 43994570 43995230

Neighbor

gene id symbol gene type direction distance location
XLOC_002441 NA coding upstream 56183 43828327 ~ 43938288 (+)
XLOC_002440 nr2f1b coding upstream 186274 43797130 ~ 43808197 (+)
XLOC_002439 NA coding upstream 469258 43518594 ~ 43525213 (+)
XLOC_002438 rasa1b coding upstream 543883 43406796 ~ 43450588 (+)
XLOC_002437 vcanb coding upstream 730586 43188678 ~ 43263885 (+)
XLOC_002444 cryba4 coding downstream 45916 44042033 ~ 44051808 (+)
XLOC_002445 NA coding downstream 59632 44055749 ~ 44198211 (+)
XLOC_002446 kmt5aa coding downstream 367078 44363195 ~ 44378081 (+)
XLOC_002447 NA coding downstream 384865 44380982 ~ 44383459 (+)
XLOC_002448 denr coding downstream 440963 44437080 ~ 44444714 (+)
XLOC_002433 NA non-coding upstream 1173565 42819726 ~ 42820906 (+)
XLOC_002432 NA non-coding upstream 1248891 42741085 ~ 42745580 (+)
XLOC_002430 NA non-coding upstream 1262477 42729946 ~ 42731994 (+)
XLOC_002453 BX569788.1 non-coding downstream 771271 44767388 ~ 44769521 (+)
XLOC_002456 BX569788.2 non-coding downstream 911651 44907768 ~ 44907883 (+)
XLOC_002457 NA non-coding downstream 917490 44913607 ~ 44917399 (+)

Expression


Co-expression Network