RNA id: TCONS_00004583


Basic Information

Item Value
RNA id TCONS_00004583
length 1647
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_002443
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43994471 ~ 43996117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACTCCTCAAGCACTTCATCTGAGCGATGTAGAGACACTTCTGCTGCTTCTGACAGATTTAGagtttggagaaaaaaaacaaaaacaatggcaaATATGATTTCTGCATGTCTGGAGATTGTTGGACTCTGCTTGACCGTCACCGGGACTCTTTTGGTGATGGTAGCCTGTGGGTTGCCCATGTGGAAAGTGTCCGCCTTCATTGAAGGCAACATTGTGGTGGCGCAAAACATCTGGGACGGGCTGTGGATGTCCTGCGTTGTTCAAAGCACAGGTCAGATGCAATGCAAAATGCACGACTCTGTCTTGGCGCTGACCACTGACCTCCAGACAGCTCGGGCTCTGACTGTCATCTCTGCGGTTTTGGGGGTCCTGGCTCTCATGATAACCATCGCCGGTGCTCAATGCACCAATTGCATCAACACGGAGTCCATCAAATCCAAAGTGGTCAACGCCGGAGGCGTGATGTACATCGTCGCAGGCTTGTTTGTTCTGATTCCTCTGTGCTGGATGGCCAATAACATCATCTCAGACTTCTACGATCCTCAAGTTCCCTACGCCAAAAAGAGAGAAATCGGAGCTGCGCTGTACATCGGATGGGCAGCATCTGCAATGCTTCTGGTCGGAGGAGCGATTCTGTGTTTCTCCCGTCCACATGATGAGAAATCCACATATCCACTTAAATATATCCCTCCGCCGACAAAAGGCACATCGATCAATGGGGACTATGATAAACGAAACTACGTCTGATCAAGAGGCTAACTATATGGACTTTTGCAGGTGCAAATGGACTTTTAAAACGATAATGCTGATGATACACCGTGGACCTACTTTGGGAAATGATCCCATAGGCAACTAGGTGTTACTAATTAGGGCAATGGGATCCAGATACAATATTGTTGCCTATTCTTAATGGAAAAGCAACTTTACAACATTGCAAAATCGCTCAAAAAGTCGCcctgtgtatcatcagcataagGGTAGCTTACCGATaagcatgttttttatgttttgtacaCATTTGTACTGATCTTCAATTCTTTTATATGACTGTACAGTgtaagaattatttttaaagtgcaaatgtTGCAGGTCATATTgataaaaatgccatttttttacATGCAACAAGTCTTGTATTGAactagtcaacatttaaagtggatcaagaGTGACCCAAGACAAGAGTGGGTATTGTTCTGATGTTTTTCCTAGTTTTTTTAATCCAATTCAAATGTACTGTAGATTCATTTCAGTGAAACAGCATTGCATACTTGCATTTGAAAGCTATTTAATATGCTCTATTAACCGAAGGTCGCGGTAATAACGAATTAAATGCACACGGGTATTTTTGGTCTTCGTTAATGATATTAGGGTCAGCGACCCACTTGTTTGTGTTCGATTTTTATCACTGTGGCTCAAGGGGGGTGAAGGGAGGGTCCATATTTCTTGTTTTTGTTCTGCTTTACTAATTAGACACGGTCTGTGCTTCAACGAGACACTGAATAATGTCTATTGTTCTGCCTGTAAACGTGCAGGCAGGCTGGTTTGATCATCTAAACCTCCTGATTGTACATAATTGTATGAAACTTTTTAgtaaatttgtgcatatacaaagtaataaataaaatgtttttttgttaa

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-140 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including cardiovascular system; eye; integument; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).

Ensembl:

ensembl_id ENSDART00000138242

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005947 lncRNA upstream 56183 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 152269 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005944 lncRNA upstream 469258 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA upstream 469258 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00004580 lncRNA upstream 552415 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005948 lncRNA downstream 59632 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005949 lncRNA downstream 384865 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00004606 lncRNA downstream 771271 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 917490 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 1144827 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00004581 mRNA upstream 186274 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004579 mRNA upstream 543883 43406919 ~ 43450588 (+) False XLOC_002438
TCONS_00004578 mRNA upstream 545475 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004577 mRNA upstream 545475 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004576 mRNA upstream 545475 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004586 mRNA downstream 45916 44042033 ~ 44051808 (+) False XLOC_002444
TCONS_00004585 mRNA downstream 45916 44042033 ~ 44051808 (+) True XLOC_002444
TCONS_00004587 mRNA downstream 61060 44057177 ~ 44198211 (+) False XLOC_002445
TCONS_00004588 mRNA downstream 61385 44057502 ~ 44198211 (+) False XLOC_002445
TCONS_00004589 mRNA downstream 150170 44146287 ~ 44189349 (+) True XLOC_002445
TCONS_00004569 other upstream 921215 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2154438 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3245573 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 3354667 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 3384518 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 703700 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 911651 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1180303 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1241839 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU415308 True 1657 lncRNA 0.41 1 CI01000158 1669452 ~ 1671108 (-)