RNA id: TCONS_00005946


Basic Information

Item Value
RNA id TCONS_00005946
length 589
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_002441
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43828327 ~ 43938288 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGACGTGTCGACGACGTAGGTCGTTTGTTATGGCCTGTGGCACGTTTAAAAGGAAAAGTGAAATTTCGCTTGCCTGTTTGACACATATTCCTtcctttttacttttattgtttgtaatttattcGCGGATTATGTATTTGGAAACCAAAATGTCCGCCTTTTTAGTATGCGACAGCGCTGCTGTAAGGTTTGCGCGCGTTTATTAGCCCAAATTGGCGCGAGTTGAGCGTACAGTATAATACATCCCGAGTCACTCGCAAAAGTGggtgttttatttgtatgtagTAAGCAATGGAACACAGCCAAGCTTGAACATCCAAGAGTTTGTCATTTTAATCGACATACGCGATGTGTCGGTGTACCTGCATTAACATCACTGAAGACCAAAGCTATCTTTGAAGGCTGCGGGGCATGCGCAGAACTGCAAACGTACCAACGCTTTCGAGTTCAACAAATGCAGGCTTCTGGAACCATTCTACGCTAGACTAGAACCGTTGTCAGCTTCACTCCATGTcacaagtccgccaacgtacacaGTGAGcaactgagcaaactggtaacagtgaaaACGGCGTTTAcatgaagg

Function

GO:

id name namespace
GO:0098534 centriole assembly biological_process
GO:0031023 microtubule organizing center organization biological_process
GO:0007098 centrosome cycle biological_process
GO:0007099 centriole replication biological_process
GO:0098536 deuterosome cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005944 lncRNA upstream 303114 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA upstream 303114 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00004580 lncRNA upstream 386271 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005943 lncRNA upstream 1007421 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 1082747 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00004582 lncRNA downstream 151150 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005948 lncRNA downstream 213547 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005949 lncRNA downstream 538780 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00004606 lncRNA downstream 925186 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 1071405 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004581 mRNA upstream 20130 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004579 mRNA upstream 377739 43406919 ~ 43450588 (+) False XLOC_002438
TCONS_00004578 mRNA upstream 379331 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004577 mRNA upstream 379331 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004576 mRNA upstream 379331 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004583 mRNA downstream 152269 43994471 ~ 43996117 (+) False XLOC_002443
TCONS_00004584 mRNA downstream 152368 43994570 ~ 43995230 (+) True XLOC_002443
TCONS_00004586 mRNA downstream 199831 44042033 ~ 44051808 (+) False XLOC_002444
TCONS_00004585 mRNA downstream 199831 44042033 ~ 44051808 (+) True XLOC_002444
TCONS_00004587 mRNA downstream 214975 44057177 ~ 44198211 (+) False XLOC_002445
TCONS_00004569 other upstream 755071 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 1988294 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3079429 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 3188523 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 3218374 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 857615 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1065566 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1334218 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1395754 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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