RNA id: TCONS_00004628


Basic Information

Item Value
RNA id TCONS_00004628
length 414
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_002466
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45148005 ~ 45205893 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTTGCTAATGTGATCCGTAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCCAAGCTGGAAGCAGCAGACGAGGTGAGACAAACAGCCAGCGTTTCTCTTCAATTCCCTCAAACAGGGAAGCCGATTTCTGCCACAGAATCAAACAAATAGgCACAATATTTACagactcatctgttattctgtctTCAGCTCAAagagattttagcttcaactgcACATTCGATTTCCATCTATCTGTCATCTGTCAAGAGACGCCCCTTTTTGCCAATTGGCCAACATAGTAGTTTATGTTGTAGGGGTTGCACAGCCTAGTCAACTTTAATGCTCTGCCATGACactttttgtgaagtttatttataaactaatgtcgagaggatcacgtgcttatgattgcttgcagctggtcct

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0060047 heart contraction biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-8 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity. Acts upstream of or within heart contraction. Predicted to be part of oxoglutarate dehydrogenase complex. Predicted to be active in mitochondrion. Orthologous to human OGDH (oxoglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000163014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005951 lncRNA upstream 31283 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005950 lncRNA upstream 259021 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 406899 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 792961 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 1119116 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005952 lncRNA downstream 178779 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004624 mRNA upstream 41839 45089820 ~ 45134581 (+) False XLOC_002464
TCONS_00004625 mRNA upstream 41844 45128375 ~ 45134576 (+) True XLOC_002464
TCONS_00004623 mRNA upstream 71039 45071603 ~ 45105381 (+) False XLOC_002464
TCONS_00004622 mRNA upstream 84195 45071603 ~ 45092225 (+) False XLOC_002464
TCONS_00004621 mRNA upstream 106238 45059702 ~ 45070182 (+) True XLOC_002463
TCONS_00004630 mRNA downstream 71402 45248326 ~ 45322706 (+) False XLOC_002468
TCONS_00004631 mRNA downstream 125501 45302425 ~ 45341821 (+) True XLOC_002468
TCONS_00004632 mRNA downstream 168650 45345574 ~ 45352279 (+) True XLOC_002469
TCONS_00004611 other upstream 268537 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 462603 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 2103164 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 3336387 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 4427522 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004629 other downstream 61032 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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