RNA id: TCONS_00004631


Basic Information

Item Value
RNA id TCONS_00004631
length 4555
RNA type mRNA
GC content 0.51
exon number 18
gene id XLOC_002468
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45248326 ~ 45341821 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCCTGCTAGGTTGAGGAGATTCGGGGTGTCCCATAGACCCCTAGATTCCTCCGATGAACCCCATCAACTCCATGAAACCTGCCCTGCCTCCAACGCCGCACAGTGACTCCTCATACCCATATGATCCTGTCCCCTGGCAGCAAGGCCCCAGTCAGCCCGCCGGCTCCCTCTCTGTGGTAACCACAGTGTGGGGGGTAACCAACCCTTCAGCCAGCCAGgttTTCGGAGCACCCATGGGTCCAGGAGGAAACTCAGCCGGGGGTCACATGATGCCGGGCAGCAGTCCGGGCATGAACTCGCCCCAGTTCATGAGCCAGCAGGGCTACCCGGAGCCCAACAAAACATACATGCAGCAGGGCATGTACGGCCGGCCCAGCGGAGGATACCCTGCCGGACCCGGATACGGCGGCagTTACCCCAATAACGGCGCCGGTTCTCTCGGGATGCCTCCTCATGGTGTTCGTCCACCCACTGACTTCACCCAAGCAGCCGCGGCAGCAGCGGTCGCCGCAGCAGCAGCCACCGCCACCGCAACCGCCACCGCAACTGTCGCCGCCTTACAGGAGAAGCAGAACCAGGAGCTGAGCTACGGCCCTATGGGCGGAGCGTCCTCCTACAACACCCAGTTCCTGTCTCACTCCGGCCCTCGTGGGCCCCCAGGGATGTCCCCCTCTGGGATGGTGGGCTCCAGACCCCCCTCTATGGGCCCCATGTACACACAGCAGGGCCAGAGGCTCCCGCAGCACCCCGGATACCCAGGGAGTCAGCAGGGGCCGCCGCGCCACCAGCAGGCCCTCAAACGCCCGTACAACTCTGAGGGTTTTCCGGGTCAGCAGTACGGCCCCGGGATGGGCGGTGGGGGACCGTACCCTGGGCAGCCCATGCAGTATCACGGCCCCGGGCCCCAGCGCTCTGCCCCGTCCCCATCATACCCCACACACCGCATGCCGCTCCAGCAGCCCAGTATGGCCCAGTATCCTGCAGGACCAGGAAACCCCAGCCAATACTACAAGCAGGCGGAGCAGTTTAACGGTCAGGGGAACAACCACAGCCTGAGCTCTGCAGTGACCACTGGAGGATACAGCAGCTTCAACCAGCCCACCGTCAAcgggccggGCCGAGCAATGCCAGGATACCCCAGTTCTCCTCTGCCTGGGAACCCCACCCCCCCCATGACCCCCGGCAGCTCCATGCCCTACATGTCCCCCAATCAGGACGTCAAATCCCCATTTCTGCACGACGTCAAGCCCAACATCAGCGCTCTGCAGCCCCCTACAGGAAACCCCAGCGATGACCTGCGTCTGACGTTCCCGGTGCGAGACGGTGTGGTTCTGGAGCCCTTCAGACTGGAGCACAACCTGGCCGTCAGTAACCATGTGTTCCAGCTGCGCGACTCCGTCTACAAAACACTCATGATGAGGCCTGATCTGGAGCTGCAGTTCAAGTGTTACCATCATGAAGACCGGCAGATGAACACTAACTGGCCGGCGTCGGTGCAGGTTAGCGTCAATGCTACGCCTCTGACCATCGAGCGCGGTGACAACAAGACGTCCCACAAACCCCTGTACCTGAAACACGTGTGCCAGCCAGGACGCAACACCATCCAGATCACCGTCACCGCCTGCTGCTGCTCTCATCTGTTCGTGCTGCAGCTGGTGCATCGGCCGTCTGTGCGCTCAGTGCTGCAGGGACTCATGAAGAAGAGGCTGCTGCCGGCCGAACACTGCGTCACCAAGATAAAGAGGAACTTCAGCAGCGGGACCATCCCGGGAACCCCAGGCCTGAACGGAGAGGATGGTGTGGAGCAAACGGCCATCAAGGTGTCGCTCAAGTGTCCCATAACGTTCAGGAGGATCCAGCTTCCAGCCCGCGGACACGACTGCAGACACATACAGTGTTTTGACCTGGAGTCGTACCTGCAGCTCAACTGTGAGAGAGGAACCTGGCGCTGTCCTGTGTGCAATAAAACCGCTCTGCTGGAGGGGCTGGAGGTGGACCAGTACATGTTGGGCATCTTGATCTACATTCAGAATTCAGACTATGAGGAGATCACCATTGACCCGGTGTGCAGCTGGAAGCCTGTCCCGGTTAAACCAGACCTGCACATTAAGGAGGATCCGGACGGGCCGGCCCTGAAGCGCTGTCGAACCCTGAGCCCCAGTCACATGATCCTGCCCAGCGTGATGGAGATGATCGCAGCGCTGGGTCCCGCATCCTCGCCCTACCAGAGTCTGCCAGCAGGGGGCAGCAGCAGCACGCCCGACTATCCCAgccaagGTGGTTCGGGATACTCCAGCCAGCCAGGCTTTTCAGATTTCCCCAACGCCCCCGGCACCCCGACCCTGGGGGAGTTCACCCCTGGCCCCCCACCCCTGTCTTACCAGTCTGACCTGCCCAGCGGACTGCTGACCCCCGAGAAACCTGTGGGACACCCAATGCCCGGACAGATGCCTCACTCTAGTCGCATGGATCCTTCCCACAATCCCCtgcagcagcaacagcagcagcatcAGGCTCTCCACGGGAGCTCCAGCATGGGTCCCGGGGCCCCGATGCACTCCCGTGGGCCCTCCCAGAATCCCCGCATGCACACAGATAGCTTCGGACTCGGGGCCCCTGGGGGACCAGGCGATGTTTCAGAGCCAGCCCTCGATCTTCTCCCAGAGCTGACGAACCCAGATGAGCTGCTGTCCTACTTGGGTCCTCCAGATCTTCCCAATAACAGTAACGATGATCTGCTGGCTCTGTTCGAGAGCAACTGAACCGTCCGGCGCTCCTCCACCGTCCAGCAGTCCTCCATCCAAGCCAAACACACATCCCATTGCGTCTGTGCACGGTTTCCTCCTGAGACTGGACCGCAGTGACTCTTGGGAAGGTGCAAGGAAGATGGCTTTTATTTTTCCTCCTGTGACGATGTTACTGTCCGACTGCTTCTCTGAACTCTGAACTTCAGTCGCTCCAATCATTTGTAGAAAGACGCACATCTCGCTTTACACTCGTGTGGTGTAGTAAaggacattgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgttgaggatCAGGTCATTGCTTGTTTTTCTTTTCACTGCGGCTCCTGTTTTAAATCTAAATTAGATGAGGAATTGTGATCTCGTAATGCTGGATTCACACCAAACACGTAATTAAGTAATCgatataaaagtaaattaaatataatggtAATGCAAACGATTGAACTATATCGAATTATGATGGCAGATAAAGCTGTGAGTGGTGTTGTAACCACAGCTGCAGAGTATTGGATTACATGTAACCTGGattacatctgtttttttttatcgtACACCAGCACTACTTTGAAAAGATTGAAGTACATAAGAACATATTGTAGAATAACGAACGAAAACTTCACATTGAGACAATACAAAACTATGTAGTTCtaaatttaaatcattaaataggATTTTTCATGTCATTATTGGATCGATAACTAAAAGCGAAGTACTCTAATGCTGTATTCAGAACAAACACGAAATTAAGTAttgaatataaaattaaattacatataaTGTTAATGCAAACATTGACGAATAATCACAGCACAGTGCGAATGTCGCAGATAAAGCTGTGAGCATTATTATAACCACAGCTGGGGAATATCGAGTGACATGTAACCTGGATTACATTAGTTTGTTTATTCGTACAGCAGCAATTTACGACTACTTCAtgacattattgaaataaataagaacatattgtataataatgaacGAAATCTTCACATTGAGACAAAACAATatagttttacattaaaaacactaAATATGAATTTTCATGTCGATATTGAATTAATAACTTACAGCGAAGTACTCTAATGCTGGATTCAGAACAAACTCCGAACTAAGTATTCAATATAAAAGTAAATCACATATAAAGTTAATGCAATCGCTTAAACAGTGGCGAATTATCACCGCAAGGTGCGAATGTTGCAGATAAACCTGTGAGCTCTACTGTAACCACAGCTGTGGAGTATCGGATTGCATGTATACTGGATTACATCTGTTTGTTTAACATACTACGTTGACTACTTTGACAAGATTGAATTCGATATGAACATATTGTATAATAACGAATGAAAACTTTacattgaaacaataaaaaaacaacatagttttacattaaaaacatgattttttatttttcatgtcgATTTAGCATCGATGACTTCCATCAAAGTACTCGGAATTAATGCGGAGTTAAAGTTAATGCAAAAAGTTGAATAGTGGCGAATTATCACCGCACAGTGCGAATGTCGCAGATAAATTTGTGAGCGTTACTGTAATCACAACTGCGGAGTATCGGATTACATGTTACCTGgattacatttgtttgtttttcgtACACCAGCAATTTACAACTATTTCATGACTACAATGAAGTAGATAAAaagtttttgtataataataataacaaacgaCAACTTCACATTAATAAGAGACAAcgcaaatgtttttaaatttgtcaTTAACAACATTAAATCTGATTTTTCATGTCAAT

Function

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048096 chromatin-mediated maintenance of transcription biological_process
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-285 Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within dorsal/ventral pattern formation and mesoderm development. Orthologous to human ZMIZ2 (zinc finger MIZ-type containing 2).

Ensembl:

ensembl_id ENSDART00000159954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005951 lncRNA upstream 157288 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005950 lncRNA upstream 385026 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 532904 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 918966 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 1245121 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005952 lncRNA downstream 13882 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004627 mRNA upstream 96532 45148167 ~ 45205893 (+) False XLOC_002466
TCONS_00004626 mRNA upstream 99229 45148005 ~ 45203196 (+) False XLOC_002466
TCONS_00004624 mRNA upstream 167844 45089820 ~ 45134581 (+) False XLOC_002464
TCONS_00004625 mRNA upstream 167849 45128375 ~ 45134576 (+) True XLOC_002464
TCONS_00004623 mRNA upstream 197044 45071603 ~ 45105381 (+) False XLOC_002464
TCONS_00004632 mRNA downstream 3753 45345574 ~ 45352279 (+) True XLOC_002469
TCONS_00004629 other upstream 64383 45237956 ~ 45238042 (+) True XLOC_002467
TCONS_00004628 other upstream 125501 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004611 other upstream 394542 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 588608 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 2229169 43037133 ~ 43073256 (+) False XLOC_002435

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000204_00155459_00172374.mRNA True 2589 mRNA 0.59 17 CI01000204 155459 ~ 172374 (-)
bowfin (Amia calva) TU167319 True 351 TUCP 0.52 2 CM030138.1 6530697 ~ 6548895 (-)
tiger barb (Puntius tetrazona) TU167319 True 1609 lncRNA 0.35 2 NC_056714.1 16190862 ~ 16192689 (-)