XLOC_002435 (atg10)


Basic Information

Item Value
gene id XLOC_002435
gene name atg10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43037064 ~ 43076207 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004568
CCTGTGCTGAATAACATTGGCTGTTCCGTGGCGCCCCCTCCGCGCTCAGGATCCCGGAAGTGGCCGTGTGAGATCATGATGACCGGTGAGAGAAAGCCTGCATCATGTTTTCTGGATGAAAAGACCTTCCGGCTTTGCTGTCGGCTTTTTCTCCAGCACTCGGAGAGCATCCAGGACGGCTGGATCTGGGAGCAGATCAAGGGCTCTGATGAAGGCTTCATGAAGAAGACTGTGCTCATCCCTGTAAAATCTAGCCTTTTGGACAAACAGCATGAGTCTATACAGGCTGAAAACACTGAACTTCCGACAGACGACTTTGAGGCAGACGCTGAGGATGAAACGGCTGGAGTTGATGCGGTGTGTGAAAGTCATGCTGTGCTGCGCTATGAATACCACGTTCTGTATTCCTGCAGCTATCAGATCCCCGTCCTCTATTTCAGAGCATCAGCGTTAGATGGGCGCTCGCTTTCTCTGGAGGAGGTGTGGAGCAACGTTCATCCAAACTACAGACAGAGGCTGAAGCAGGAGCCCTGGGACACACTGACACAGCAGgaacaTCCACTACTTGGCCAGCCGTTTTTCATGCTTCATCCATGTCGCACAGAGGAGTTCATGAAACCCGCTCTGGAATTAGCACATGCTCAAAACAGGAAGGTGAACTATATTGTGAGCTGGCTCAGTGTTGTGGGTCCTGTCGTCGGCCTGGACGTCCCGTTGAGCTTCAGCACTGCCGTTTCTGCTCCAGATTAAATTGTCTTTCTGTCATCCTGATCTGATCTTCAGTTTCCAGAGGACCTGCAGAGCTAACCTGTGGTGAATCTGCAGAAACGGTTTATCATTAACCAGCATCAACCGTCTCTACATGGTTAAACTGGTAAAGAGTTGTGCAGGAACATTCAGCACATGTGCACAAACCAGCTCAGACTTTCTTAGTGAAGTGTAAACACATGGACTGTCAGCGTGTCGTTCATCAGGGATGCTTTCAAATGATCCAAAGTAACAGTAAAGATGttttaatgttacaaaagattaCATGTCctataaataaatgctgtttttaggCTGATGTCATAGAATTATTTTTTCTGTCAAGAATCTTgacagggtggcacggtggctcagtggttagcactgtggcttccagcaagtaggtcactggttcgagaccCGTCtcggtcagttgtcatttctgtatggagtttgcatgttctcctcgtgttggcgtgggttttctccgcgTGTTCTGTTTTCCCTCTCAGTccaaaccatagactgtaaaatatatggacgtagtatccgtgatgtcacccataggtttctaaagagcgcaaaa
>TCONS_00004569
GAGATCATGATGACCGGTGAGAGAAAGCCTGCATCATGTTTTCTGGATGAAAAGACCTTCCGGCTTTGCTGTCGGCTTTTTCTCCAGCACTCGGAGAGCATCCAGGACGGCTGGATCTGGGAGCAGATCAAGGGCTCTGATGAAGGCTTCATGAAGAAGACTGTGCTCATCCCTGTAAAATCTAGCCTTTTGGACAAACAGCATGAGTCTATACAGGCTGAAAACACTGAACTTCCGACAGACGACTTTGAGATGGGCGCTCGCTTTCTCTGGAGGAGGTGTGGAGCAACGTTCATCCAAACTACAGACAGAGGCTGAAGCAGGAGCCCTGGGACACACTGACACAGCAGgaacaTCCACTACTTGGCCAGCCGTTTTTCATGCTTCATCCATGTCGCACAGAGGAGTTCATGAAACCCGCTCTGGAATTAGCACATGCTCAAAACAGGAAGGTGAACTATATTGTGAGCTGGCTCAGTGTTGTGGGTCCTGTCGTCGGCCTGGACGTCCCGTTGAGCTTCAGCACTGCCGTTTCTGCTCCAGATTAAATTGTCTTTCTGTCATCCTGATCTGATCTTCAGTTTCCAGAGGACCTGCAGAGCTAACCTGTGGTGAATCTGCAGAAACGGTTTATCATTAACCAGCATCAACCGTCTCTACATGGTTAAACTGGTAAAGAGTTGTGCAGGAACATTCAGCACATGTGCACAAACCAGCTCAGACTTTCTTAGTGAAGTGTAAACACATGGACTGTCAGCGTGTCGTTCATCAGGGATGCTTTCAAATGATCCAAAGTAACAGTAAAGATGttttaatgttacaaaagattaCATGTCctataaataaatgctgtttttaggCTGA
>TCONS_00004570
GTTTGTGAAGATTTGCTATTGAAGCTAGACACGCAGACAGAGCTAACCCGCTCAAGTGTGTGCTTTTTGTTTATTGCTTTGCACTCTGTAATTAATTAAGGCATGTTGTGAACTTGTGTCTGTGTAGTTTGTAGTTGTAGATGCGCTTTAAACCGGCTGATCGGTGAAGATGTGAATAACCGGCTTGTTTGATGTTTCTCATTTCTGCTTGTTCATGCAGAGGGAGTGAAAGAGGCACGGGCAGGAAAGAGCCATTTAGCGAATCAGACGTTTCCTCTTGAGTAATTGAAGCCAGAGTCACTGTTGCGATCCAGCAGCCAAAAGTTGTAATTGAATTTGTGTTTCGGCAATTGGAAATGTGCATGTGAATATACACAGCTTGCTTTTTTAAGTGCACCGTTTTTTGGATGTTACCTGTCATGTAGTCTGAAGTGTAGCTGTGTGTGAATGTAGAGGTCTGCAATGGTCAAAGTTCAGGATAAATGGTGTTATTGCCTCACAAATGAAAGAGATGACCGGTGAGAGAAAGCCTGCATCATGTTTTCTGGATGAAAAGACCTTCCGGCTTTGCTGTCGGCTTTTTCTCCAGCACTCGGAGAGCATCCAGGACGGCTGGATCTGGGAGCAGATCAAGGGCTCTGATGAAGGCTTCATGAAGAAGACTGTGCTCATCCCTGTAAAATCTAGCCTTTTGGACAAACAGCATGAGTCTATACAGGCTGAAAACACTGAACTTCCGACAGACGACTTTGAGGCAGACGCTGAGGATGAAACGGCTGGAGTTGATGCGGTGTGTGAAAGTCATGCTGTGCTGCGCTATGAATACCACGTTCTGTATTCCTGCAGCTATCAGATCCCCGTCCTCTATTTCAGAGCATCAGCGTTAGATGGGCGCTCGCTTTCTCTGGAGGAGGTGTGGAGCAACGTTCATCCAAACTACAGACAGAGGCTGAAGCAGGAGCCCTGGGACACACTGACACAGCAGgaacaTCCACTACTTGGCCAGCCGTTTTTCATGCTTCATCCATGTCGCACAGAGGAGTTCATGAAACCCGCTCTGGAATTAGCACATGCTCAAAACAGGAAGGTGAACTATATTGTGAGCTGGCTCAGTGTTGTGGGTCCTGTCGTCGGCCTGGACGTCCCGTTGAGCTTCAGCACTGCCGTTTCTGCTCCAGATTAAATTGTCTTTCTGTCATCCTGATCTGATCTTCAGTTTCCAGAGGACCTGCAGAGCTAACCTGTGGTGAATCTGCAGAAACGGTTTATCATTAACCAGCATCAACCGTCTCTACATGGTTAAACTGGTAAAGAGTTGTGCAGGAACATTCAGCACATGTGCACAAACCAGCTCAGACTTTCTTAGTGAAGTGTAAACACATGGACTGTCAGCGTGTCGTTCATCAGGGATGCTTTCAAATGATCCAAAGTAACAGTAAAGATGttttaatgttacaaaagattaCATGTCctataaataaatgctgtttttaggCTGATGTCATAGAATTATTTTTTCTGTCAAGAATCTTgacagggtggcacggtggctcagtggttagcactgtggcttccagcaagtaggtcactggttcgagaccCGTCtcggtcagttgtcatttctgtatggagtttgcatgttctcctcgtgttggcgtgggttttctccgcgTGTTCTGTTTTCCCTCTCAGTccaaaccatagactgtaaaatatatggacgtagtatccgtgatgtcacccataggtttctaaagagcgcaaaagaagccacaagtaggcgcggccaaccgtcgccattttgttcgcgcgtcatcacacccacgacgggataccaaacaagggcaaagaggcggagagtgggcggagctacagacgcatgctgCATTTAGCTTGGAGCTGGTTCAGACACCtggtttactttgggagaacgcttaatacttcatcacctgcgactcgtttgtgttctgaccacttgtgcttggttgtacactttatcaataaagtgtttagacttttaaaaacactgctgtaacacactgagccactaaacattgttcagattagtgatgggtcattcataaacgattcgttcattttgaacgtatcttcaatatgactcgggaactacaagtcctctcaggaactgattcgttcatccgcacgtccgcacatttgtgcaggtagtatcgttaatttcaagtcttcatcacattggcagaagccaatcatatgtgtttagagccggaaaaagaattgatccgctcacctctcgagtcctctatcgggtctgagtcactcgttcatcacgagccaatcatacgcatttagagccggaaaaagaattgaaccgctcatctctcgagtcctcgggtttgagtcattctgccacgtgatgaacgaacgatcatggctcctatcggcttagactgtgcattgattaagattaaatGTGTctctgtcagtgtaacgtgaacgaaccactgacatttgaagacatgaagaggtgagctgagcacagagacaacaataccttcatagacaaaagagcaggtaaacattgaattattattttctccttctcatAGTATTCCATTGatgacttatttgttgtgtgatcaaccttttgggctagttgtagatgtgttttgaagcaattcgtaacattttaataatattttggcgaattgaaccaaatgaacgaaatgactcgaaaaaagattcgttcatctcgatgaacgagactcaaagatccgagtcagtaaaatgatcccaacttcccatcactatttcAGATTAACAAGAATGATCACTgagcatgtttcctaaatatctgcaaacatattatggtatttctatgctttagaagagtcaaaactgtacatacagcacctttaaatggaCAGGAACTGCAGGACTGATATTTATACTCAGCCAATCCCCCAGAGTAGAAAAAGTAAGGTAGGGCCTGCAGTTTGAAGGAAGATAGAAGAGTAAAAGATGGTTAGTAAAGTAGAATCCCTGAGAAAAcgactcaattacagtcatttgagtatttgtaatttgttacttcacaccGCTGCTGGTCTTGAGTTGTGAATCTGGCCTATAATTTCACATGTCAGAAGCTTGAAATTGAACTGCGACATTATTCAAATACCCTCGCATCCTGTAAGCCTGGTCTAAATATACATGTTGTTGTGTCTCCCTGCAGTCTGCCGTTTCATTACTCATCCTccaggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtcgtgccAGGACACGCTTTGAGAGTTGAATGGGATCGAATGTGTCTGATGTGGAGTCTGAATAGGGAAGCTGAGTTGCAGAGAAGACGCTGAAAGTCCTCCGTCAGCATGTCTAAATGGGGCGCGCGGCTCTCTGGGGACTCCATCAGCGTTGGTAAGGAGGTCAGTCTGCTACCCGGAGCATCTCGCTCTAATGGACGGACAGCAGAGATGGAGAGACAGAAACACGGAGATGGAGCACAGCAGGGAAATCAGGCCTGCTTCACAAAcagtgttggggaggttactttggaaatgtagattacagattacaaatgaccctatttaaaatgtgatGAGTACCTtttcgattactttataaaagtaaagtaactgattacatctgattacttttggattacttttaagtttctaatggatattttcaactattttcaagcatttatactgAGCAGGTGTGAGCTTACGGTTTACTGTTAGAAtctctaaggccgtactcacactaggtacagtagcctcgaaccgggccaaagcacgcttgtcccccctcccgtctcccccgacggcccgcgctcacaccatatcgggcctcggcacgcttacgtcatcgctgctgcgctgttcagtgagaagcgctctctcactcagcagcacagtggagatttctctagttatatcgtttcagtcgtttgatatgccgtcaaatatttcgccaaacagtccttagggatgcggggacacgcagtcagatatttcaccggacagatccgccacttttggcgctcataaacaatcataaagccctcgtgctgcaggaatgaggaggtctgctgaagccgtgcagctgtcgtgcagtgaggagttctcgtctttaataaactacggcagtttgcgttccctgaacagtaagaatgattaataaatccatatgaagccccttaaaagtcacgtctcgctttcaggccgtactcacactaggtacagttgcctcgaaccgggccaaagcacgcttgtcccccctcccgtctcccccgacggcccgcgctcacaccatatcgggcctcggcacgcttgcgtcatcgctgctgcgctgttcagaagcgctctctatggcaagccttttaagcatttaaatctttgttctgactccataaatatatttagagatatctacaattgc

Function

symbol description
atg10 Predicted to enable Atg12 transferase activity. Predicted to be involved in macroautophagy; protein lipidation; and protein modification by small protein conjugation. Orthologous to human ATG10 (autophagy related 10).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0032446 protein modification by small protein conjugation biological_process
GO:0016236 macroautophagy biological_process
GO:0006497 protein lipidation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0019777 Atg12 transferase activity molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04131 Membrane trafficking
ko04121 Ubiquitin system
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051030-72 Predicted to enable Atg12 transferase activity. Predicted to be involved in macroautophagy; protein lipidation; and protein modification by small protein conjugation. Orthologous to human ATG10 (autophagy related 10).

Ensembl:

ensembl_id ENSDARG00000104846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004568 False 1333 mRNA 0.48 7 43037064 43073523
TCONS_00004569 False 864 nonsense_mediated_decay 0.47 6 43037133 43073256
TCONS_00004570 True 4450 mRNA 0.45 7 43039947 43076207

Neighbor

gene id symbol gene type direction distance location
XLOC_002434 zcchc9 coding upstream 133348 42898103 ~ 42903716 (+)
XLOC_002433 NA coding upstream 216158 42819726 ~ 42820906 (+)
XLOC_002432 NA coding upstream 291484 42741085 ~ 42745580 (+)
XLOC_002431 CABZ01063556.1 coding upstream 296402 42733210 ~ 42740662 (+)
XLOC_002430 NA coding upstream 305070 42729946 ~ 42731994 (+)
XLOC_002436 xrcc4 coding downstream 12063 43088270 ~ 43184354 (+)
XLOC_002437 vcanb coding downstream 112471 43188678 ~ 43263885 (+)
XLOC_002438 rasa1b coding downstream 330589 43406796 ~ 43450588 (+)
XLOC_002439 NA coding downstream 442387 43518594 ~ 43525213 (+)
XLOC_002440 nr2f1b coding downstream 720923 43797130 ~ 43808197 (+)
XLOC_002429 NA non-coding upstream 313843 42720841 ~ 42723221 (+)
XLOC_002424 NA non-coding upstream 559805 42470616 ~ 42477259 (+)
XLOC_002441 NA non-coding downstream 752120 43828327 ~ 43938288 (+)
XLOC_002442 CR384089.1 non-coding downstream 917145 43993352 ~ 44024651 (+)
XLOC_002445 NA non-coding downstream 979542 44055749 ~ 44198211 (+)
XLOC_002447 NA non-coding downstream 1304775 44380982 ~ 44383459 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_01221423_01241226 ATG10 coding CI01000158 null 1221423 ~ 1241431 (+)
striped catfish (Pangasianodon hypophthalmus) G57644 NA non-coding NC_047598.1 CM018544.1 741042 ~ 747397 (+)