G57644


Basic Information

Item Value
gene id G57644
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 741042 ~ 747397 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68064
AAAGCGAGCGAACAGTGAGTGTTGCTTAGTGATGGGAAGTTCGGATCATTTCACCGACTCGGACCTTTGAGTCTCGTTCAGCAAAATGAACGAATCTTTTTTCGAGTCATTTcgttcattttgttcattttagcaaaatataattaaaatgttacgtgTTACTTCCCTAACACATCTACTACTTACGCAAACGTTGATCAcactacaaacaagacaaaactataatgctataagaaacagaaaacattaattcattgtttacctGGATCTTTAGTCTATGATTAGCTCACCTCGCCTCTTATCTGACAAGTCTTCGGGTCTGAGTCGTTCGTTCATCACGTGACAGCCCCATGAGCTTAACCAGTGCAGTCTTAgccggaaagagaattgattagttcatctctcgaGTCTTTCGAGTCGTTCGTTCTGTGACCGAGCGTTCGTGCAGGGTTTGCCTAAACACTTATGGATAAGAAAACAATAAACGAGAACATCCGAACTCTTCTTAACTTTTtattctccaacacacaccagagA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68064 True 537 lncRNA 0.40 2 741042 747397

Neighbor

gene id symbol gene type direction distance location
LOC117597017 NA coding upstream 142554 567218 ~ 598488 (+)
LOC117597164 NA coding upstream 461423 274120 ~ 279619 (+)
LOC113525288 LOC108267083 coding upstream 526392 207355 ~ 214650 (+)
LOC113525287 NA coding upstream 553531 178609 ~ 187511 (+)
dspa dsp,dspa,LOC108267071,LOC107567868,LOC107671686,LOC107593747,LOC107660412,LOC107705101 coding upstream 566179 136920 ~ 174863 (+)
LOC113525291 NA coding downstream 22756 770153 ~ 788020 (+)
LOC113525285 LOC108267077,LOC108442756,LOC105899226 coding downstream 62847 810244 ~ 821396 (+)
LOC113524738 NA coding downstream 140579 887976 ~ 891005 (+)
mier1b mier1 coding downstream 145428 892825 ~ 912422 (+)
LOC113524101 NA coding downstream 168077 915474 ~ 924362 (+)
G57628 NA non-coding upstream 1598 673386 ~ 739444 (+)
G57621 NA non-coding upstream 6268 595868 ~ 734774 (+)
G57632 NA non-coding upstream 14940 705843 ~ 726102 (+)
G57642 NA non-coding upstream 21305 718300 ~ 719737 (+)
G57630 NA non-coding upstream 22864 703937 ~ 718178 (+)
LOC117597024 NA non-coding downstream 9238 756635 ~ 757283 (+)
LOC117597019 NA non-coding downstream 14457 761854 ~ 762267 (+)
G57647 NA non-coding downstream 19320 766717 ~ 767700 (+)
LOC117597023 NA non-coding downstream 74179 821576 ~ 825888 (+)
G57656 NA non-coding downstream 103963 851360 ~ 853222 (+)
G57583 NA other upstream 333246 355813 ~ 407796 (+)
G57528 LOC108267083 other upstream 487616 199248 ~ 253426 (+)
LOC113525551 LOC108268216 other upstream 703356 28790 ~ 37686 (+)
tmie tmie,LOC107708584,LOC107671654,LOC102776014,LOC106599657,LOC107567872 other downstream 680811 1428208 ~ 1442113 (+)
LOC113523999 abhd3 other downstream 1495303 2242700 ~ 2274093 (+)
LOC113524005 NA other downstream 1612469 2359866 ~ 2378916 (+)
LOC113523987 NA other downstream 1641999 2389396 ~ 2391485 (+)
LOC113523985 NA other downstream 1655248 2402645 ~ 2430374 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002435 atg10 coding NC_007121.7 CM002894.2 43037064 ~ 43076207 (+)